theislab / multicpa
☆14Updated 2 years ago
Alternatives and similar repositories for multicpa:
Users that are interested in multicpa are comparing it to the libraries listed below
- ☆57Updated 6 months ago
- Spatial reconstruction of dissociated single-cell data☆17Updated last year
- Template repository for creating novel models with scvi-tools☆19Updated 2 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆26Updated 3 years ago
- ☆53Updated 11 months ago
- cTPnet Package☆24Updated 2 years ago
- ☆29Updated this week
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆13Updated 5 months ago
- ACTIONet single-cell analysis framework☆38Updated 6 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- CellDrift: temporal perturbation effects for single cell data☆13Updated 2 years ago
- ☆26Updated last year
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆29Updated 6 months ago
- CAST package☆32Updated 4 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 5 months ago
- ☆51Updated this week
- ☆51Updated 4 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆23Updated 4 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆18Updated 10 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 3 years ago
- ☆45Updated last week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆46Updated 2 months ago
- single cell foundation model for Gene network inference and more☆15Updated 6 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆25Updated last month
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆35Updated this week
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 4 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- ☆21Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year