UCE is a zero-shot foundation model for single-cell gene expression data
☆334Jul 8, 2026Updated last month
Alternatives and similar repositories for UCE
Users that are interested in UCE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆427Nov 23, 2025Updated 9 months ago
- ☆173Jul 3, 2024Updated 2 years ago
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆662Jul 24, 2026Updated last month
- ☆1,621Apr 29, 2026Updated 4 months ago
- ☆561Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Arc Virtual Cell Atlas☆585Updated this week
- ☆111Jul 16, 2026Updated last month
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆38Mar 1, 2026Updated 6 months ago
- ☆159Nov 6, 2025Updated 9 months ago
- pytorch dataloaders for single-cell perturbation data☆51Jul 18, 2026Updated last month
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆259Mar 14, 2026Updated 5 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆170Nov 23, 2025Updated 9 months ago
- ☆361Dec 13, 2023Updated 2 years ago
- ☆863Apr 20, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆68Sep 13, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆403Feb 1, 2025Updated last year
- Single-cell perturbation analysis☆337Updated this week
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆106Mar 28, 2024Updated 2 years ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆116Jun 28, 2026Updated 2 months ago
- ☆23Apr 30, 2025Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆41Jul 29, 2025Updated last year
- Single-cell perturbation effects prediction benchmark☆103May 6, 2026Updated 3 months ago
- 🏃 The go-to single-cell Foundation Model☆157Aug 11, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆38Aug 4, 2026Updated 3 weeks ago
- ☆342Aug 16, 2026Updated 2 weeks ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,684Updated this week
- A tool for semi-automatic cell type classification☆502May 22, 2026Updated 3 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆63May 30, 2024Updated 2 years ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆878Nov 4, 2025Updated 9 months ago
- Consensus peaks of chromatin accessibility in the human genome☆18Dec 1, 2025Updated 9 months ago
- A foundation model for single-cell epigenomic data☆72Jun 3, 2026Updated 3 months ago
- Pytorch implementation of EpiFoundation☆26Feb 25, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆99Jun 10, 2026Updated 2 months ago
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆26Mar 12, 2025Updated last year
- ☆32Jan 22, 2025Updated last year
- A model developed for the generation of scRNA-seq data☆95Jan 21, 2026Updated 7 months ago
- ☆51May 18, 2026Updated 3 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆154Aug 21, 2026Updated last week