snap-stanford / UCELinks
UCE is a zero-shot foundation model for single-cell gene expression data
☆207Updated 4 months ago
Alternatives and similar repositories for UCE
Users that are interested in UCE are comparing it to the libraries listed below
Sorting:
- ☆303Updated last week
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆94Updated 3 months ago
- ☆321Updated last month
- ☆70Updated last month
- ☆131Updated last year
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆201Updated 2 weeks ago
- Single-Cell (Perturbation) Model Library☆63Updated 2 weeks ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆71Updated last month
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆272Updated 5 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆129Updated 4 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆87Updated last year
- ☆103Updated 5 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆44Updated 10 months ago
- Models and datasets for perturbational single-cell omics☆153Updated 2 years ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆176Updated 2 weeks ago
- Perturbation Analysis in the scverse ecosystem.☆185Updated this week
- Transformer for One-Stop Interpretable Cell-type Annotation☆142Updated last year
- Modeling complex perturbations with CellFlow☆64Updated this week
- single cell foundation model for Gene network inference and more☆90Updated last week
- Arc Virtual Cell Atlas☆355Updated 2 months ago
- ☆320Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆102Updated 11 months ago
- ☆342Updated 5 months ago
- A model developed for the generation of scRNA-seq data☆67Updated 4 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆57Updated 6 months ago
- ☆269Updated last year
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆58Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆67Updated last year
- ☆80Updated 11 months ago
- Spatial alignment of single cell transcriptomic data.☆306Updated last week