Alternatives and similar repositories for UCE

Users that are interested in UCE are comparing it to the libraries listed below

• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆127Updated last week
• theislab / single-cell-transformer-papers
  ☆336Updated 6 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆364Updated last week
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆315Updated 10 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆154Updated 9 months ago
• jkobject / geneformer
  ☆85Updated 3 months ago
• snap-stanford / SATURN
  ☆145Updated last year
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆227Updated 5 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆84Updated 3 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆99Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆79Updated 9 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆168Updated 3 years ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆110Updated 3 weeks ago
• ArcInstitute / arc-virtual-cell-atlas
  Arc Virtual Cell Atlas
  ☆458Updated 6 months ago
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆123Updated this week
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• scverse / pertpy
  Single-cell perturbation analysis
  ☆217Updated last week
• biomap-research / scFoundation
  ☆372Updated last week
• nitzanlab / biolord
  ☆87Updated last year
• yiqunchen / GenePT
  ☆297Updated last year
• const-ae / linear_perturbation_prediction-Paper
  ☆62Updated 4 months ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆65Updated last month
• Genentech / SpatialAgent
  ☆133Updated 8 months ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆151Updated last year
• bowang-lab / scGPT-spatial
  ☆116Updated 9 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆119Updated last year
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆146Updated last year
• xCompass-AI / GeneCompass
  GeneCompass
  ☆99Updated last month
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆99Updated last week
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆60Updated last year