UCE is a zero-shot foundation model for single-cell gene expression data
☆256Feb 26, 2026Updated 4 months ago
Alternatives and similar repositories for UCE
Users that are interested in UCE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆168Jul 3, 2024Updated 2 years ago
- ☆418Nov 23, 2025Updated 7 months ago
- ☆1,590Apr 29, 2026Updated 2 months ago
- ☆486Updated this week
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆116Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆67Sep 13, 2024Updated last year
- ☆357Dec 13, 2023Updated 2 years ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆165Nov 23, 2025Updated 7 months ago
- Arc Virtual Cell Atlas☆548Updated this week
- Consensus peaks of chromatin accessibility in the human genome☆18Dec 1, 2025Updated 7 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆104Mar 28, 2024Updated 2 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆379Feb 1, 2025Updated last year
- Code for evaluating single cell foundation models scBERT and scGPT☆48Aug 25, 2024Updated last year
- ☆342May 23, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆150Nov 6, 2025Updated 7 months ago
- ☆861Apr 20, 2025Updated last year
- Single-cell perturbation effects prediction benchmark☆90May 6, 2026Updated last month
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆257Mar 14, 2026Updated 3 months ago
- Code and documentation for the curation of cellxgene datasets☆57Updated this week
- GeneCompass☆119Feb 10, 2026Updated 4 months ago
- ☆40Feb 24, 2026Updated 4 months ago
- A tool for semi-automatic cell type classification☆491May 22, 2026Updated last month
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆37Jul 29, 2025Updated 11 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Deep probabilistic analysis of single-cell and spatial omics data☆1,649Jun 25, 2026Updated last week
- ☆62Apr 5, 2024Updated 2 years ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61May 30, 2024Updated 2 years ago
- ☆320Mar 18, 2024Updated 2 years ago
- 🏃 The go-to single-cell Foundation Model☆153May 20, 2026Updated last month
- Repo for our work "Systematic Evaluation of Large Vision-Language Models for Surgical Artificial Intelligence"☆21Jun 2, 2025Updated last year
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆21Jun 8, 2026Updated 3 weeks ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆180Feb 25, 2025Updated last year
- ☆19Jun 11, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Direct estimation of mean and covariance from single cell RNA seq experiments☆135May 5, 2025Updated last year
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆608May 4, 2026Updated 2 months ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆871Nov 4, 2025Updated 8 months ago
- ☆84Jan 9, 2026Updated 5 months ago
- ☆36Jan 21, 2025Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆61Aug 17, 2024Updated last year
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆127May 25, 2026Updated last month