SabbaghCodes / ImbalancedLearningForSingleCellFoundationModelsLinks
Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single-cell cell-type distribution data.
☆13Updated 6 months ago
Alternatives and similar repositories for ImbalancedLearningForSingleCellFoundationModels
Users that are interested in ImbalancedLearningForSingleCellFoundationModels are comparing it to the libraries listed below
Sorting:
- ☆16Updated last month
- ☆59Updated 9 months ago
- ☆55Updated last year
- Learning meaningful representations of genes☆19Updated 8 months ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆14Updated 8 months ago
- ☆47Updated 3 months ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆31Updated 3 months ago
- ☆31Updated 2 months ago
- ☆10Updated last month
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated 3 weeks ago
- ☆17Updated 11 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 8 months ago
- Modeling complex perturbations with CellFlow☆57Updated last week
- ☆10Updated last year
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆28Updated 10 months ago
- SIMBA: SIngle-cell eMBedding Along with features☆19Updated last year
- ☆27Updated 2 weeks ago
- Pytorch implementation of EpiFoundation☆20Updated 4 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆25Updated 9 months ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆58Updated last year
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆12Updated 2 years ago
- ☆14Updated last week
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated 11 months ago
- ☆18Updated 2 years ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆54Updated 11 months ago
- ☆13Updated 2 weeks ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆14Updated last year
- ☆26Updated last year