SabbaghCodes / ImbalancedLearningForSingleCellFoundationModelsLinks
Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single-cell cell-type distribution data.
☆16Updated 11 months ago
Alternatives and similar repositories for ImbalancedLearningForSingleCellFoundationModels
Users that are interested in ImbalancedLearningForSingleCellFoundationModels are comparing it to the libraries listed below
Sorting:
- ☆17Updated 7 months ago
- ☆57Updated last year
- Learning meaningful representations of genes☆19Updated 4 months ago
- ☆50Updated 8 months ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆33Updated this week
- ☆61Updated last year
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Updated 5 months ago
- Pytorch implementation of EpiFoundation☆24Updated 9 months ago
- ☆33Updated 7 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated last year
- ☆14Updated 6 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆60Updated last year
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆57Updated last year
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- Vector representations of gene co-expression in single cell RNAseq.☆36Updated 3 weeks ago
- ☆34Updated 7 months ago
- ☆50Updated 8 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- ☆17Updated last year
- ☆15Updated 5 months ago
- ☆50Updated last month
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Updated last year
- ☆18Updated 3 years ago
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Updated 2 years ago
- ☆14Updated 5 months ago
- ☆15Updated 3 years ago
- ☆25Updated last year
- Reproducibility repository for the Human Neural Organoid Atlas publication☆42Updated 11 months ago
- ☆25Updated 7 months ago