OmicsML / awesome-deep-learning-single-cell-papersLinks
☆832Updated 8 months ago
Alternatives and similar repositories for awesome-deep-learning-single-cell-papers
Users that are interested in awesome-deep-learning-single-cell-papers are comparing it to the libraries listed below
Sorting:
- ☆380Updated this week
- ☆338Updated 7 months ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆445Updated 2 months ago
- ☆384Updated last month
- ☆343Updated 2 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆325Updated 11 months ago
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆384Updated last month
- Arc Virtual Cell Atlas☆478Updated 3 weeks ago
- ☆1,432Updated 2 months ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆813Updated last week
- UCE is a zero-shot foundation model for single-cell gene expression data☆236Updated 10 months ago
- https://www.sc-best-practices.org☆1,103Updated 3 weeks ago
- This is the alpha version of the CellOracle package☆408Updated last year
- scripts and notebooks from sanbomics☆457Updated last year
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆480Updated 3 weeks ago
- Awesome-AI-Virtual-Cell☆145Updated last month
- Formalizing and benchmarking open problems in single-cell genomics☆420Updated last month
- Benchmarking analysis of data integration tools☆400Updated 3 months ago
- ☆301Updated last year
- Spatial alignment of single cell transcriptomic data.☆345Updated 6 months ago
- A list of scRNA-seq analysis tools☆768Updated last week
- Reference mapping for single-cell genomics☆396Updated last month
- Deep probabilistic analysis of single-cell and spatial omics data☆1,534Updated this week
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆495Updated last week
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆447Updated 2 weeks ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆455Updated 7 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆412Updated last month
- Single cell perturbation prediction☆330Updated last year
- Single-Cell (Perturbation) Model Library☆88Updated last week
- A tool for semi-automatic cell type classification☆443Updated last week