OmicsML / awesome-deep-learning-single-cell-papers
☆695Updated last month
Related projects ⓘ
Alternatives and complementary repositories for awesome-deep-learning-single-cell-papers
- ☆260Updated last month
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆351Updated this week
- ☆166Updated this week
- Graph-linked unified embedding for single-cell multi-omics data integration☆384Updated 8 months ago
- https://www.sc-best-practices.org☆779Updated 2 weeks ago
- ☆266Updated 3 months ago
- ☆278Updated 11 months ago
- ☆1,047Updated 3 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆210Updated 3 months ago
- A list of scRNA-seq analysis tools☆635Updated this week
- This is the alpha version of the CellOracle package☆313Updated last week
- List of software packages for multi-omics analysis☆732Updated 6 months ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆471Updated last week
- Gene Set Enrichment Analysis in Python☆568Updated last week
- scripts and notebooks from sanbomics☆362Updated this week
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,396Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆321Updated this week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆421Updated 3 weeks ago
- ☆537Updated 3 years ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆407Updated 3 weeks ago
- ☆178Updated 8 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆165Updated this week
- Reference mapping for single-cell genomics☆335Updated 3 weeks ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,251Updated this week
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆278Updated 2 months ago
- tools and notes for spatial omics☆247Updated last month
- RNA foundation model☆208Updated 7 months ago
- Spatial alignment of single cell transcriptomic data.☆259Updated 5 months ago
- Benchmarking analysis of data integration tools☆309Updated last month
- ☆524Updated 3 weeks ago