Alternatives and similar repositories for awesome-deep-learning-single-cell-papers:

Users that are interested in awesome-deep-learning-single-cell-papers are comparing it to the libraries listed below

• theislab / single-cell-transformer-papers
  ☆304Updated 3 weeks ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆245Updated 2 months ago
• gao-lab / GLUE
  Graph-linked unified embedding for single-cell multi-omics data integration
  ☆406Updated last year
• OmicsML / dance
  DANCE: a deep learning library and benchmark platform for single-cell analysis
  ☆355Updated this week
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆245Updated last month
• biomap-research / scFoundation
  ☆306Updated last month
• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆682Updated 3 weeks ago
• openproblems-bio / openproblems
  Formalizing and benchmarking open problems in single-cell genomics
  ☆331Updated last month
• TencentAILabHealthcare / scBERT
  ☆291Updated last year
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆187Updated last month
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆341Updated 2 months ago
• Starlitnightly / omicverse
  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
  ☆593Updated last week
• yiqunchen / GenePT
  ☆253Updated last year
• theislab / single-cell-best-practices
  https://www.sc-best-practices.org
  ☆865Updated this week
• aristoteleo / dynamo-release
  Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …
  ☆444Updated 2 months ago
• bowang-lab / scGPT
  ☆1,163Updated 7 months ago
• ArcInstitute / arc-virtual-cell-atlas
  Arc Virtual Cell Atlas
  ☆232Updated this week
• theislab / single-cell-tutorial
  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…
  ☆1,461Updated 2 years ago
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆339Updated 2 months ago
• ventolab / CellphoneDB
  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
  ☆370Updated 2 months ago
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆395Updated 4 months ago
• crazyhottommy / awesome_spatial_omics
  tools and notes for spatial omics
  ☆274Updated last month
• zqfang / GSEApy
  Gene Set Enrichment Analysis in Python
  ☆609Updated last week
• calico / basenji
  Sequential regulatory activity predictions with deep convolutional neural networks.
  ☆428Updated 9 months ago
• mdozmorov / HiC_tools
  A collection of tools for Hi-C data analysis
  ☆571Updated this week
• crazyhottommy / scRNAseq-analysis-notes
  scRNAseq analysis notes from Ming Tang
  ☆682Updated 3 months ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆766Updated 11 months ago
• theislab / scarches
  Reference mapping for single-cell genomics
  ☆358Updated last month
• MAGICS-LAB / DNABERT_2
  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
  ☆350Updated 3 months ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆181Updated last month