OmicsML / awesome-deep-learning-single-cell-papersLinks
☆788Updated 2 months ago
Alternatives and similar repositories for awesome-deep-learning-single-cell-papers
Users that are interested in awesome-deep-learning-single-cell-papers are comparing it to the libraries listed below
Sorting:
- ☆306Updated last week
- ☆321Updated last month
- Graph-linked unified embedding for single-cell multi-omics data integration☆418Updated last month
- ☆344Updated 5 months ago
- DANCE: a deep learning library and benchmark platform for single-cell analysis☆366Updated 3 weeks ago
- ☆320Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆272Updated 5 months ago
- ☆1,271Updated last week
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆677Updated last week
- Arc Virtual Cell Atlas☆364Updated 2 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆208Updated 4 months ago
- https://www.sc-best-practices.org☆951Updated this week
- This is the alpha version of the CellOracle package☆366Updated 6 months ago
- scripts and notebooks from sanbomics☆426Updated 7 months ago
- Benchmarking analysis of data integration tools☆366Updated 6 months ago
- ☆270Updated last year
- Formalizing and benchmarking open problems in single-cell genomics☆363Updated 2 weeks ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆462Updated last month
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,498Updated 2 years ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆400Updated 7 months ago
- Spatial alignment of single cell transcriptomic data.☆306Updated 2 weeks ago
- Single-Cell (Perturbation) Model Library☆63Updated 2 weeks ago
- Gene Set Enrichment Analysis in Python☆643Updated last month
- Deep probabilistic analysis of single-cell and spatial omics data☆1,411Updated last week
- A list of scRNA-seq analysis tools☆712Updated last week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆365Updated 3 weeks ago
- List of software packages for multi-omics analysis☆818Updated 3 months ago
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆60Updated 6 months ago
- A tool for semi-automatic cell type classification☆387Updated 3 weeks ago
- Reference mapping for single-cell genomics☆375Updated last month