Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
☆129Oct 3, 2025Updated 10 months ago
Alternatives and similar repositories for PDGrapher
Users that are interested in PDGrapher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆107Mar 16, 2026Updated 5 months ago
- ☆158Nov 6, 2025Updated 9 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆393Feb 1, 2025Updated last year
- Learning Universal Representations of Intermolecular Interactions with ATOMICA☆226Apr 13, 2026Updated 4 months ago
- A modern multimodal knowledge graph with type-specific metadata across biomedical domains.☆116Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Causal Differential Networks (ICML 2025)☆17Jun 3, 2025Updated last year
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆120Jul 6, 2025Updated last year
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆51Jul 10, 2026Updated last month
- Medea: An AI agent for therapeutic reasoning across biological contexts☆124Jul 17, 2026Updated last month
- ☆52Jun 16, 2025Updated last year
- Fairness in single-cell data☆21Mar 25, 2026Updated 4 months ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆32Mar 13, 2025Updated last year
- Cell Painting Gallery☆137Aug 11, 2026Updated last week
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated 10 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆111Jul 16, 2026Updated last month
- TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design☆283May 6, 2024Updated 2 years ago
- Tahoe-x1 is a single cell foundation model designed for gigascale datasets☆162Updated this week
- Drug repositioning with adaptive graph convolutional networks☆17Sep 22, 2024Updated last year
- Code and example of the D-SPIN framework☆40Aug 5, 2026Updated last week
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆872Nov 4, 2025Updated 9 months ago
- Contextual AI models for single-cell protein biology☆110May 7, 2026Updated 3 months ago
- ☆31Jan 22, 2025Updated last year
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Comprehensive suite for evaluating perturbation prediction models☆151Jul 27, 2026Updated 3 weeks ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆326Jul 8, 2026Updated last month
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆43Feb 19, 2026Updated 5 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 4 years ago
- Code for paper: "Removing Biases from Molecular Representations via Information Maximization"☆21Apr 4, 2024Updated 2 years ago
- Build PharMeBINet from different sources.☆22Jul 14, 2026Updated last month
- MaxToki: an autoregressive single-cell language model built on BioNeMo/NeMo/Megatron.☆28Jul 28, 2026Updated 3 weeks ago
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆45Jul 31, 2025Updated last year
- ☆183Jan 30, 2026Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆71Jan 14, 2026Updated 7 months ago
- ☆91Jul 18, 2025Updated last year
- Functional Embedding of Gene Signatures☆49Feb 29, 2024Updated 2 years ago
- ☆59Mar 3, 2026Updated 5 months ago
- First metabolite-centric knowledge graph.☆16Apr 25, 2025Updated last year
- pytorch dataloaders for single-cell perturbation data☆51Jul 18, 2026Updated last month
- This is the official repository for the Human Cell Atlas Heart project.☆33Jul 28, 2020Updated 6 years ago