Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
☆132Oct 3, 2025Updated 11 months ago
Alternatives and similar repositories for PDGrapher
Users that are interested in PDGrapher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repository for reproducing experiments from the TxPert paper☆52Mar 25, 2026Updated 6 months ago
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆123Mar 16, 2026Updated 6 months ago
- ☆166Nov 6, 2025Updated 10 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆414Feb 1, 2025Updated last year
- Learning Universal Representations of Intermolecular Interactions with ATOMICA☆229Sep 3, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Causal Differential Networks (ICML 2025)☆17Jun 3, 2025Updated last year
- A modern multimodal knowledge graph with type-specific metadata across biomedical domains.☆142Sep 21, 2026Updated last week
- Arc Virtual Cell Atlas☆608Updated this week
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆130Jul 6, 2025Updated last year
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆57Jul 10, 2026Updated 2 months ago
- Medea: An AI agent for therapeutic reasoning across biological contexts☆131Jul 17, 2026Updated 2 months ago
- ☆54Jun 16, 2025Updated last year
- Fairness in single-cell data☆21Mar 25, 2026Updated 6 months ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆32Mar 13, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cell Painting Gallery☆140Updated this week
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated 11 months ago
- Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"☆17Updated this week
- TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design☆291May 6, 2024Updated 2 years ago
- ☆115Sep 7, 2026Updated 3 weeks ago
- Tahoe-x1 is a single cell foundation model designed for gigascale datasets☆164Aug 25, 2026Updated last month
- Drug repositioning with adaptive graph convolutional networks☆17Sep 22, 2024Updated 2 years ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆882Nov 4, 2025Updated 10 months ago
- Contextual AI models for single-cell protein biology☆110May 7, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆33Jan 22, 2025Updated last year
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- Code and example of the D-SPIN framework☆43Aug 5, 2026Updated last month
- UCE is a zero-shot foundation model for single-cell gene expression data☆344Jul 8, 2026Updated 2 months ago
- Comprehensive suite for evaluating perturbation prediction models☆160Jul 27, 2026Updated 2 months ago
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆44Feb 19, 2026Updated 7 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 4 years ago
- Code for paper: "Removing Biases from Molecular Representations via Information Maximization"☆21Apr 4, 2024Updated 2 years ago
- Build PharMeBINet from different sources.☆22Jul 14, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MaxToki: an autoregressive single-cell language model built on BioNeMo/NeMo/Megatron.☆28Jul 28, 2026Updated 2 months ago
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆45Sep 19, 2026Updated last week
- ☆188Jan 30, 2026Updated 8 months ago
- ☆96Jul 18, 2025Updated last year
- Functional Embedding of Gene Signatures☆50Feb 29, 2024Updated 2 years ago
- ☆75Jan 14, 2026Updated 8 months ago
- First metabolite-centric knowledge graph.☆16Apr 25, 2025Updated last year