Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
☆133Oct 3, 2025Updated last year
Alternatives and similar repositories for PDGrapher
Users that are interested in PDGrapher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A repository for reproducing experiments from the TxPert paper☆55Mar 25, 2026Updated 7 months ago
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆57Jul 10, 2026Updated 3 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆425Feb 1, 2025Updated last year
- Graph AI generates neurological hypotheses validated in molecular, organoid, and clinical systems☆42Dec 27, 2025Updated 10 months ago
- A modern multimodal knowledge graph with type-specific metadata across biomedical domains.☆154Sep 21, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Causal Differential Networks (ICML 2025)☆17Jun 3, 2025Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆19Oct 10, 2026Updated last month
- Conditional Monge Gap (2026; Nature Machine Intelligence)☆25Aug 10, 2026Updated 3 months ago
- CIPHER: Covariance Inference for Perturbation and High-dimensional Expression Response☆13Oct 5, 2026Updated last month
- ☆55Jun 16, 2025Updated last year
- Arc Virtual Cell Atlas☆652Oct 29, 2026Updated last week
- Multimodal foundation model predicting transcriptome-wide virtual spatial transcriptomics from histology.☆61Sep 4, 2026Updated 2 months ago
- Generative modeling of spatially resolved perturbation responses with CONCERT☆29Oct 18, 2026Updated 3 weeks ago
- ☆117Sep 7, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆77Jan 14, 2026Updated 9 months ago
- ☆168Nov 6, 2025Updated last year
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆131Mar 16, 2026Updated 7 months ago
- Codebase for BioPathNet to predict links in biomedical knowledge graphs☆45Feb 19, 2026Updated 8 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆32Jun 14, 2022Updated 4 years ago
- Learning Universal Representations of Intermolecular Interactions with ATOMICA☆231Sep 3, 2026Updated 2 months ago
- ☆10Aug 2, 2025Updated last year
- FluxGAT introduces a graph neural network (GNN) model designed to predict gene essentiality by utilising graphical representations derive…☆11Mar 5, 2026Updated 8 months ago
- Terminal based chat implementation of ARK agent☆13Mar 12, 2026Updated 7 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Predictive World Model of the Transcriptome☆35Oct 18, 2025Updated last year
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆133Jul 6, 2025Updated last year
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆17Nov 5, 2024Updated 2 years ago
- ☆12Jun 14, 2026Updated 4 months ago
- Medea: An AI agent for therapeutic reasoning across biological contexts☆138Jul 17, 2026Updated 3 months ago
- Tahoe-x1 is a single cell foundation model designed for gigascale datasets☆168Aug 25, 2026Updated 2 months ago
- Code for paper: "Removing Biases from Molecular Representations via Information Maximization"☆21Apr 4, 2024Updated 2 years ago
- ☆33Jan 22, 2025Updated last year
- XPert: A Knowledge-Informed Dual-Branch Transformer Model for Predicting Drug-Induced Cellular Perturbation Effects☆28Nov 22, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fairness in single-cell data☆22Nov 2, 2026Updated last week
- ☆46Sep 29, 2026Updated last month
- Example notebooks that illustrate how to generate knowledge-based features. Features can be used in a variety of ML models, including rec…☆12Feb 23, 2022Updated 4 years ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆352Jul 8, 2026Updated 4 months ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆32Mar 13, 2025Updated last year
- This repository contains all supporting analyses and files for Ramezani, Weisbart, Bauman, and Singh, et al. "A genome-wide atlas of huma…☆15Apr 10, 2025Updated last year
- ProCyon: A multimodal foundation model for protein phenotypes☆62Nov 25, 2025Updated 11 months ago
Are these results useful?