Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks
☆128Oct 3, 2025Updated 9 months ago
Alternatives and similar repositories for PDGrapher
Users that are interested in PDGrapher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tokenizing Loops of Antibodies☆35Nov 23, 2025Updated 7 months ago
- ☆30Jan 22, 2025Updated last year
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆32Mar 13, 2025Updated last year
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆102Mar 16, 2026Updated 3 months ago
- Principal curves implementation (Hastie '89) in Python☆18Apr 1, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Flexible analysis of high-content CRISPR screening☆33Mar 6, 2026Updated 4 months ago
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆14Nov 5, 2024Updated last year
- ☆10Jan 19, 2019Updated 7 years ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆17Apr 8, 2021Updated 5 years ago
- ☆60Jul 22, 2025Updated 11 months ago
- A modular and user-friendly Python framework for protein and ligand engineering workflows on SLURM clusters☆97Jun 26, 2026Updated last week
- ☆22Jul 22, 2025Updated 11 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆380Feb 1, 2025Updated last year
- ☆21Jun 5, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Build contrasts for models defined with formulaic☆13Jun 29, 2026Updated last week
- SUPREME: A GCN based approach for cancer subtype prediction☆18Aug 9, 2023Updated 2 years ago
- Collection of tutorials to build RNA-KG v2.0 from scratch and for reproducing experiments such as "context-aware" KG pruning, clustering,…☆29Mar 16, 2026Updated 3 months ago
- BioDWH2 is an easy-to-use, automated, graph-based data warehouse and mapping tool for bioinformatics and medical informatics.☆19Jun 23, 2026Updated 2 weeks ago
- Arc Virtual Cell Atlas☆548Jul 1, 2026Updated last week
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆79Mar 7, 2025Updated last year
- ☆28May 26, 2026Updated last month
- Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs☆25Jun 8, 2026Updated last month
- ☆15Jul 26, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Drug repositioning with adaptive graph convolutional networks☆18Sep 22, 2024Updated last year
- Build PharMeBINet from different sources.☆21Jan 15, 2026Updated 5 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆62May 19, 2025Updated last year
- ☆320Mar 18, 2024Updated 2 years ago
- Functional Embedding of Gene Signatures☆48Feb 29, 2024Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆31Jun 14, 2022Updated 4 years ago
- ☆62Apr 5, 2024Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆42May 29, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 👑 A lightweight molecular dynamics pipeline for running protein simulations on portable hardware☆51Mar 23, 2026Updated 3 months ago
- ☆40Feb 24, 2026Updated 4 months ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆871Nov 4, 2025Updated 8 months ago
- ☆92May 29, 2025Updated last year
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- ☆18Apr 13, 2026Updated 2 months ago
- ☆27May 16, 2026Updated last month