☆83Jan 9, 2026Updated 4 months ago
Alternatives and similar repositories for zero-shot-scfoundation
Users that are interested in zero-shot-scfoundation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…☆15Dec 8, 2024Updated last year
- ☆410Nov 23, 2025Updated 6 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆48Aug 25, 2024Updated last year
- ☆449Jan 21, 2026Updated 4 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆37Jul 29, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Jul 24, 2024Updated last year
- ☆1,566Apr 29, 2026Updated 3 weeks ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆34Aug 13, 2024Updated last year
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆31Aug 20, 2025Updated 9 months ago
- ☆855Apr 20, 2025Updated last year
- Gene2Vec: Distributed Representation of Genes Based on Co-Expression☆139Mar 18, 2022Updated 4 years ago
- ☆17Nov 12, 2025Updated 6 months ago
- 🏃 The go-to single-cell Foundation Model☆148Updated this week
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆13Nov 5, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆70Dec 29, 2024Updated last year
- ☆341May 23, 2025Updated last year
- ☆165Jul 3, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆363Feb 1, 2025Updated last year
- ☆317Mar 18, 2024Updated 2 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Nov 20, 2025Updated 6 months ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆116Mar 27, 2026Updated last month
- ☆356Dec 13, 2023Updated 2 years ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆255Feb 26, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Sep 12, 2025Updated 8 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61May 30, 2024Updated last year
- This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…☆11Feb 7, 2023Updated 3 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆132May 29, 2025Updated 11 months ago
- ☆56Dec 5, 2024Updated last year
- [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"☆30Jul 2, 2025Updated 10 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆150Feb 6, 2025Updated last year
- Generative Pretraining from Transcriptomes☆17Feb 6, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- [ECCV 2024] Code for the paper "Mew: Multiplexed Immunofluorescence Image Analysis through an Efficient Multiplex Network"☆18Jul 27, 2024Updated last year
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆40Dec 17, 2025Updated 5 months ago
- ChatCell: Facilitating Single-Cell Analysis with Natural Language☆52Jun 5, 2025Updated 11 months ago
- ☆17Sep 13, 2024Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆70Apr 24, 2026Updated 3 weeks ago
- Arc Virtual Cell Atlas☆522Feb 12, 2026Updated 3 months ago