☆19Apr 30, 2025Updated 10 months ago
Alternatives and similar repositories for pascient
Users that are interested in pascient are comparing it to the libraries listed below
Sorting:
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆29Mar 1, 2026Updated 2 weeks ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆24Dec 12, 2025Updated 3 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- [COLM 2024] Large Language Models as Biomedical Hypothesis Generators: A Comprehensive Evaluation☆15Jul 15, 2024Updated last year
- ☆64Sep 13, 2024Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated last month
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆29Jan 21, 2024Updated 2 years ago
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆20Jan 31, 2026Updated last month
- ☆16Dec 3, 2025Updated 3 months ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 3 years ago
- It discovers linear dependent columns and then replaces linear dependent columns with linearly independent columns that span the space o…☆16Jul 4, 2024Updated last year
- ☆53Oct 9, 2025Updated 5 months ago
- Transformer Based Embeddings of Wasserstein Distance☆22Feb 18, 2026Updated last month
- ☆17Jul 12, 2024Updated last year
- Implementation of the Latent CCM paper☆18Jun 8, 2024Updated last year
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 8 months ago
- 🏃 The go-to single-cell Foundation Model☆142Feb 20, 2026Updated last month
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆64Apr 14, 2024Updated last year
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- ☆21Dec 10, 2025Updated 3 months ago
- ☆99Aug 26, 2025Updated 6 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆38Dec 17, 2025Updated 3 months ago
- CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer☆29Sep 12, 2025Updated 6 months ago
- ☆65May 21, 2025Updated 9 months ago
- Jeroen Cottaar's work for the Kaggle Geophysical Waveform Inversion competition (2nd place)☆11Aug 11, 2025Updated 7 months ago
- ☆26Apr 9, 2025Updated 11 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year
- Python package to interactively annotate histological images within a jupyter notebook☆18Oct 20, 2025Updated 5 months ago
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Easy & Pretrained SOTA Deep Learning for RNA strings☆12Apr 15, 2022Updated 3 years ago
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆25Dec 22, 2020Updated 5 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆31Jun 19, 2024Updated last year
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆60Updated this week
- Python package implementing our method MatchCLOT for multimodal single-cell data integration☆14May 19, 2023Updated 2 years ago
- LaTeX tutorial using Texmaker. This repository follows [Michelle Krummel's Tutorial](https://www.youtube.com/watch?v=SoDv0qhyysQ&list=PL1…☆12Jun 14, 2018Updated 7 years ago
- Multi-encoder segmentation for contrail detection in satellite imagery | Google Researc☆11Jan 28, 2026Updated last month
- ☆17Nov 3, 2025Updated 4 months ago