Alternatives and similar repositories for pascient

Users that are interested in pascient are comparing it to the libraries listed below

• theislab / scTab
  ☆59Updated last year
• KrishnaswamyLab / Gene-Signal-Pattern-Analysis
  Learning meaningful representations of genes
  ☆19Updated 2 months ago
• suinleelab / contrastiveVI
  ☆56Updated last year
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆15Updated 10 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆27Updated 5 months ago
• dpeerlab / ENVI
  ☆50Updated 3 months ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆32Updated 5 months ago
• Teichlab / celcomen
  ☆16Updated 3 weeks ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆19Updated last year
• SabbaghCodes / ImbalancedLearningForSingleCellFoundationModels
  Code for the benchmarking single-cell foundation models (scGPT, scBERT, and Geneformer) for cell-type annotation task using skewed single…
  ☆13Updated 9 months ago
• visze / sequence_cnn_models
  ☆13Updated 7 months ago
• tudaga / LabelCorrection
  Python code for cross-condition label refinement in single-cell data with HiDDEN
  ☆14Updated 11 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆53Updated 2 weeks ago
• wanglab-broad / CAST
  CAST package
  ☆40Updated 10 months ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆16Updated last year
• JialongJiang / DSPIN
  Code and example of the D-SPIN framework
  ☆24Updated last month
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆48Updated this week
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆33Updated last month
• theislab / multicpa
  ☆15Updated 3 years ago
• theislab / prophet
  ☆36Updated this week
• theislab / mubind
  Learning motif contributions to cell transitions using sequence features and graphs.
  ☆28Updated last year
• nceglia / genevector
  Vector representations of gene co-expression in single cell RNAseq.
  ☆36Updated 3 months ago
• GET-Foundation / gcell
  Python playground for cell-type-specific biology
  ☆12Updated 2 weeks ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆27Updated last week
• const-ae / linear_perturbation_prediction-Paper
  ☆49Updated last month
• vandijklab / CINEMA-OT
  ☆33Updated 4 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated last month
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆21Updated 3 months ago