TranslationalBioinformaticsUnit / scbert-reusabilityLinks
Reusability report of scBERT
☆16Updated last year
Alternatives and similar repositories for scbert-reusability
Users that are interested in scbert-reusability are comparing it to the libraries listed below
Sorting:
- Contextual AI models for single-cell protein biology☆96Updated 11 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆143Updated last year
- ☆28Updated last year
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆104Updated 3 weeks ago
- ☆25Updated last year
- Paper collection for single cell foundation models☆35Updated last year
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆74Updated last year
- RiboNucleic Acid (RNA) Language Model☆154Updated 4 months ago
- ☆35Updated last year
- Unconstrained lattice antibody-antigen bindings generator☆111Updated 2 months ago
- [NBME] Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆23Updated 5 months ago
- DeepTTC: a transformer-based model for predicting cancer drug response☆19Updated 2 years ago
- BulkFormer: A large-scale foundation model for human bulk transcriptomes☆40Updated last month
- ☆39Updated 4 months ago
- A repository for reproducing experiments from the TxPert paper☆25Updated 3 weeks ago
- ☆79Updated last month
- Benchmarking study of machine learning methods for prediction of synthetic lethality☆19Updated last year
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆67Updated last year
- ☆22Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆143Updated last year
- ☆138Updated 2 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆134Updated last year
- ☆110Updated 3 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- official repo for scPEFT☆50Updated 3 weeks ago
- TEIM: TCR-Epitope Interaction Modeling☆56Updated 2 years ago
- ☆23Updated last year
- ☆95Updated last year
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59Updated 3 years ago
- ☆57Updated 2 years ago