Alternatives and similar repositories for CommPath:

Users that are interested in CommPath are comparing it to the libraries listed below

• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 2 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆59Updated 4 months ago
• jumphone / FitDevo
  FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight
  ☆15Updated 10 months ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆14Updated last year
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆32Updated 4 years ago
• PaulingLiu / metaICB
  ☆22Updated last year
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆24Updated last month
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated 11 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆29Updated 3 years ago
• bio-Pixel / panVC
  ☆39Updated 11 months ago
• single-cell-BGI / NHPCA
  ☆17Updated 3 years ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆41Updated last year
• Teichlab / SKM_ageing_atlas
  ☆12Updated 10 months ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / TonsilAtlas
  Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)
  ☆28Updated last month
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆21Updated last year
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆12Updated 3 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆26Updated 10 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆20Updated 2 years ago
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆20Updated 5 months ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆39Updated last year
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆23Updated last year
• califano-lab / single-cell-pipeline
  ☆44Updated 5 years ago
• JSB-UCLA / scPNMF
  ☆13Updated last year
• chensujun / scRNA
  ☆30Updated 3 years ago
• youqiongye / CRC_scRNAseq
  ☆44Updated 3 years ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆19Updated last year
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆20Updated 2 years ago