Alternatives and similar repositories for CommPath

Users that are interested in CommPath are comparing it to the libraries listed below

• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆35Updated last month
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆43Updated 2 years ago
• jumphone / FitDevo
  FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight
  ☆16Updated last year
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated 3 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆22Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 4 months ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆45Updated last year
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆65Updated 4 years ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago
• campbio / decontX
  Methods for decontamination of single cell data
  ☆52Updated 9 months ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆34Updated 4 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆86Updated 2 years ago
• Coolgenome / iTALK
  ☆64Updated 6 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 7 months ago
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆85Updated 3 years ago
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆39Updated 5 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆25Updated last year
• chloelulu / scMayoMap
  ☆25Updated 2 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 9 months ago
• genecell / COSGR
  Accurate and fast cell marker gene identification with COSG
  ☆62Updated 2 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated last year
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆40Updated 2 years ago
• bio-Pixel / panVC
  ☆55Updated last year