R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics
☆38Mar 10, 2025Updated 11 months ago
Alternatives and similar repositories for CommPath
Users that are interested in CommPath are comparing it to the libraries listed below
Sorting:
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Oct 10, 2025Updated 4 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Jan 12, 2024Updated 2 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆18Jul 31, 2024Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆45Apr 12, 2023Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Aug 16, 2021Updated 4 years ago
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated last year
- Transcriptomics Visualization R package.☆76Apr 16, 2025Updated 10 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆64Oct 16, 2025Updated 4 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆22Aug 28, 2025Updated 5 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆39Nov 10, 2025Updated 3 months ago
- ☆23Jul 9, 2025Updated 7 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆29Oct 24, 2024Updated last year
- Codes for the scPLC project☆74Dec 2, 2022Updated 3 years ago
- ☆10Dec 15, 2024Updated last year
- ☆14Oct 11, 2019Updated 6 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Sep 6, 2024Updated last year
- ☆85Jun 29, 2024Updated last year
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆12Dec 27, 2023Updated 2 years ago
- Profile and Heatmap Visualization by Using ggplot2 and grid☆12Nov 21, 2023Updated 2 years ago
- Functional Annotation for Single-Cell Transcriptomics☆11Jun 29, 2024Updated last year
- ☆48Feb 7, 2024Updated 2 years ago
- Shiny app for the analysis of single cell data☆26Nov 11, 2025Updated 3 months ago
- Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…☆53Jul 13, 2023Updated 2 years ago
- ☆13Sep 30, 2024Updated last year
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆16Apr 7, 2024Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆146Jan 14, 2026Updated last month
- ☆57Jan 2, 2024Updated 2 years ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆294Updated this week
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Apr 11, 2025Updated 10 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Apr 4, 2025Updated 10 months ago
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆19Jan 28, 2025Updated last year
- ☆15Jan 24, 2023Updated 3 years ago
- Multiome GRN inference.☆135Apr 19, 2024Updated last year
- ☆37Feb 16, 2026Updated last week
- R functions underlying OmicsNet☆20Feb 10, 2026Updated 2 weeks ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Apr 15, 2025Updated 10 months ago