Alternatives and similar repositories for CommPath

Users that are interested in CommPath are comparing it to the libraries listed below

• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 7 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆69Updated 9 months ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆36Updated 2 years ago
• perou-lab / MultiK
  MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…
  ☆22Updated last year
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆67Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆41Updated last year
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆22Updated last year
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆41Updated 2 years ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆35Updated 4 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 2 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 2 years ago
• youqiongye / CRC_scRNAseq
  ☆46Updated 3 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆14Updated 3 months ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆55Updated 2 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆23Updated 2 weeks ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆62Updated 8 months ago
• JerryZhang-1222 / starTracer
  A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis
  ☆32Updated 10 months ago
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆22Updated 2 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆22Updated last year
• campbio / decontX
  Methods for decontamination of single cell data
  ☆47Updated 4 months ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated 2 years ago
• meichendong / SCDC
  SCDC
  ☆45Updated 3 weeks ago
• jumphone / FitDevo
  FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight
  ☆16Updated last year
• Coolgenome / iTALK
  ☆62Updated 5 years ago