jumphone / VectorLinks
Unsupervised Inference of Developmental Directions for Single Cells
☆22Updated last year
Alternatives and similar repositories for Vector
Users that are interested in Vector are comparing it to the libraries listed below
Sorting:
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 3 weeks ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆50Updated 7 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- ☆50Updated 5 years ago
- ☆30Updated 6 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆16Updated 2 years ago
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- ☆58Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆60Updated 2 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆36Updated 5 months ago
- ☆56Updated this week
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Single-Cell Inference of Class Switch Recombination☆19Updated 5 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆20Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- ☆37Updated 2 years ago
- Methods for decontamination of single cell data☆47Updated 6 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 10 months ago
- ☆22Updated 2 years ago
- ☆31Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆28Updated last year