xia-lab / OmicsNetRLinks
R functions underlying OmicsNet
☆20Updated last month
Alternatives and similar repositories for OmicsNetR
Users that are interested in OmicsNetR are comparing it to the libraries listed below
Sorting:
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
 - ☆19Updated last year
 - An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
 - Explore the cancer relevance of your gene list☆52Updated last month
 - ☆25Updated 4 months ago
 - Multi-omics data normalisation, model fitting and visualisation.☆28Updated 2 years ago
 - ☆37Updated last month
 - R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆16Updated this week
 - A tool for large scale omics datasets evaluation☆25Updated 2 years ago
 - xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆34Updated 2 weeks ago
 - A Tidy Framework to Hack Gene Expression Signatures☆19Updated 6 months ago
 - Time-Course Multi-Omics data integration☆25Updated last year
 - R package☆21Updated last year
 - Improved Ribo-seq enables identification of cryptic translation events☆16Updated 7 years ago
 - Analysis and visualization of RNA-Seq results☆30Updated last month
 - R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 4 years ago
 - A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
 - Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
 - IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
 - BioCarta pathway images☆11Updated 2 years ago
 - QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
 - A single cell sequencing read simulator.☆33Updated last year
 - TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 4 years ago
 - Single cell proteomics data processing☆29Updated 2 weeks ago
 - GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated 6 months ago
 - Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
 - COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 weeks ago
 - Snakemake pipeline for running MAJIQ☆23Updated last year
 - The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 6 months ago
 - R/Shiny package for network-integrated pathway enrichment analysis☆13Updated 4 years ago