xia-lab / OmicsNetRLinks
R functions underlying OmicsNet
☆20Updated 3 months ago
Alternatives and similar repositories for OmicsNetR
Users that are interested in OmicsNetR are comparing it to the libraries listed below
Sorting:
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆16Updated 2 weeks ago
- ☆23Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- Analysis and visualization of RNA-Seq results☆30Updated 2 weeks ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- ☆36Updated 2 months ago
- ☆25Updated 6 months ago
- Gene-level general linear mixed model☆23Updated 2 months ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆34Updated last month
- BioCarta pathway images☆11Updated 2 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated this week
- R package☆21Updated 2 years ago
- R package to use EaSIeR to predict anti-tumor immune response from bulk RNA-seq☆15Updated 3 weeks ago
- Easy and comprehensive biological network reconstruction and analysis☆34Updated 3 months ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- An S3 data object and framework for common quantitative proteomic analyses☆47Updated 2 weeks ago
- R/Shiny package for network-integrated pathway enrichment analysis☆13Updated 5 years ago
- Explore the cancer relevance of your gene list☆52Updated last week
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 8 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year
- Time-Course Multi-Omics data integration☆26Updated last year
- Improved Ribo-seq enables identification of cryptic translation events☆16Updated 7 years ago
- A tool for large scale omics datasets evaluation☆23Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆17Updated 2 months ago
- A General Framework for Consensus Partitioning☆65Updated 10 months ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated 2 weeks ago
- ☆29Updated 2 years ago
- ☆31Updated 2 years ago