Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network
☆32Sep 6, 2024Updated 2 years ago
Alternatives and similar repositories for DeepTalk
Users that are interested in DeepTalk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12May 24, 2024Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆93Mar 19, 2026Updated 7 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Mar 16, 2025Updated last year
- ☆18Mar 27, 2023Updated 3 years ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆19Sep 25, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆20Sep 19, 2025Updated last year
- ☆152Jun 25, 2026Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 3 weeks ago
- ☆17Sep 29, 2023Updated 3 years ago
- ☆15Jun 27, 2025Updated last year
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆89Jul 20, 2025Updated last year
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆23Mar 25, 2026Updated 7 months ago
- ☆15Jan 24, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆153Feb 20, 2025Updated last year
- scTM: A package for topic modelling in transcriptomics data☆28May 1, 2024Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆80Jan 17, 2025Updated last year
- ☆10Jul 6, 2024Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- Implementation of CellNEST method☆71Jun 23, 2026Updated 4 months ago
- scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links☆25Jun 10, 2025Updated last year
- Spatial Transcriptome Image and Expression integration enables single cell level spatial data analysis☆14Sep 7, 2024Updated 2 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆77Oct 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆84May 24, 2024Updated 2 years ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆15Jul 29, 2025Updated last year
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆60Jan 6, 2025Updated last year
- scDisInFact is a single-cell data integration and condition effect prediction framework☆18Sep 19, 2024Updated 2 years ago
- Multi-omics data analysis for rare population inference using single-cell graph transformer☆25Nov 5, 2025Updated 11 months ago
- ☆48May 4, 2024Updated 2 years ago
- scPair: Boosting single cell multimodal analysis by leveraging single cell atlases and implicit feature selection☆13Sep 8, 2025Updated last year
- NeST-VNN repo☆12Jun 13, 2025Updated last year
- EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.☆17Oct 7, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆33May 4, 2025Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Updated this week
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆76Dec 1, 2025Updated 11 months ago
- ☆37Jun 15, 2026Updated 4 months ago
- ☆175Dec 20, 2024Updated last year
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated 2 years ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆20May 26, 2025Updated last year