JiangBioLab / DeepTalk
Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network
☆18Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for DeepTalk
- ☆29Updated 10 months ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆11Updated 7 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆31Updated 6 months ago
- Spatial direct messaging detected by bivariate Moran☆24Updated last week
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆38Updated 3 months ago
- ☆40Updated 6 months ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆21Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆27Updated 5 months ago
- RA Synovial Single-cell Multimodal Cell Atlas☆12Updated 8 months ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆23Updated 8 months ago
- ☆21Updated 6 months ago
- ☆20Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆56Updated last month
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆14Updated 8 months ago
- ☆32Updated 9 months ago
- Spatial Cellular Estimator for Tumors☆42Updated this week
- ☆30Updated 10 months ago
- Reproducing the experiments of the DestVI paper☆17Updated 2 years ago
- ☆45Updated 2 months ago
- ☆16Updated this week
- SPROD: Spatial expression profiling de-noising☆33Updated last year
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆17Updated 2 years ago
- ☆38Updated last month
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆11Updated 3 weeks ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆26Updated 10 months ago
- ☆16Updated last year
- ☆28Updated 2 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆20Updated 2 weeks ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆44Updated last year