JiangBioLab / DeepTalkLinks
Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network
☆27Updated last year
Alternatives and similar repositories for DeepTalk
Users that are interested in DeepTalk are comparing it to the libraries listed below
Sorting:
- ☆15Updated 5 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆44Updated 3 months ago
- ☆50Updated last month
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆25Updated last year
- Detect hierarchical structures in cell-cell communications☆16Updated 10 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 10 months ago
- ☆31Updated 9 months ago
- ☆46Updated last year
- ☆32Updated last month
- Spatial direct messaging detected by bivariate Moran☆31Updated 4 months ago
- ☆60Updated last year
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 9 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆25Updated 5 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Updated last month
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆69Updated 3 weeks ago
- RA Synovial Single-cell Multimodal Cell Atlas☆19Updated last year
- The benchmarking of spatial transcriptomics deconvolution methods☆33Updated 2 years ago
- ☆41Updated 6 months ago
- ☆14Updated 5 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆61Updated last month
- R implementation of GeneTrajectory☆65Updated last year
- End-to-end analysis of spatial multi-omics data☆97Updated last month
- Predict RNA velocity through deep learning☆71Updated last year
- Spatial Cellular Estimator for Tumors☆60Updated 2 weeks ago
- Spatially resolved transcriptomic analysis☆61Updated 3 years ago
- ☆30Updated 7 months ago
- ☆22Updated last year