Alternatives and similar repositories for DeepTalk

Users that are interested in DeepTalk are comparing it to the libraries listed below

• dpeerlab / ENVI
  ☆50Updated last month
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆42Updated 3 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆95Updated 10 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆31Updated 3 months ago
• LiHongCSBLab / SOAPy
  ☆31Updated 8 months ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆40Updated 9 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• KlugerLab / SIMVI
  ☆15Updated 4 months ago
• Patchouli-M / SequencingCancerFinder
  ☆39Updated 5 months ago
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆72Updated 9 months ago
• QuKunLab / SPACEL
  ☆60Updated last year
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 9 months ago
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆60Updated 3 weeks ago
• prabhakarlab / Banksy_py
  ☆66Updated this week
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆65Updated last year
• Xinyiw28 / CrossChat
  Detect hierarchical structures in cell-cell communications
  ☆16Updated 9 months ago
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆18Updated last year
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆38Updated 4 years ago
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆25Updated last year
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• Teichlab / HCA_Heart_ver2
  ☆40Updated 2 years ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• madilabcode / scNET
  ☆55Updated last month
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆58Updated last month
• leihouyeung / STdeconv_benchmark
  The benchmarking of spatial transcriptomics deconvolution methods
  ☆33Updated 2 years ago
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆78Updated 6 months ago
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆14Updated last month
• yunguan-wang / Spacia
  ☆30Updated 6 months ago
• Banovich-Lab / Spatial_PF
  ☆31Updated 3 weeks ago
• QuKunLab / MultiomeBenchmarking
  ☆50Updated 8 months ago