Alternatives and similar repositories for DeepTalk

Users that are interested in DeepTalk are comparing it to the libraries listed below

• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆47Updated 9 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated last month
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆76Updated 5 months ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆28Updated 2 weeks ago
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆13Updated last year
• xiaoyeye / TFvelo
  ☆44Updated last year
• theislab / scTab
  ☆58Updated 8 months ago
• LiHongCSBLab / SOAPy
  ☆29Updated 3 months ago
• wanglab-broad / CAST
  CAST package
  ☆38Updated 7 months ago
• lanagarmire / Asgard
  ☆42Updated last year
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆35Updated 3 months ago
• JiangBioLab / DeepCCI
  ☆21Updated 2 years ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆24Updated last month
• Teichlab / HCA_Heart_ver2
  ☆35Updated last year
• Banovich-Lab / Spatial_PF
  ☆27Updated 3 months ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆22Updated 2 years ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆52Updated last week
• leihouyeung / STdeconv_benchmark
  The benchmarking of spatial transcriptomics deconvolution methods
  ☆31Updated 2 years ago
• wanglabtongji / CCI
  Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
  ☆21Updated 2 years ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated last year
• Junjie-Hu / NSCLC-immunotherapy
  ☆23Updated last year
• madilabcode / scNET
  ☆42Updated last week
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆44Updated this week
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 7 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 3 months ago
• QuKunLab / MultiomeBenchmarking
  ☆44Updated 2 months ago
• dpeerlab / ENVI
  ☆48Updated last week
• yjgeno / GenKI
  ☆15Updated last year