Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
☆31Oct 24, 2024Updated last year
Alternatives and similar repositories for CEFCON
Users that are interested in CEFCON are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Jul 8, 2021Updated 4 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 10 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Apr 14, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- trajectory inference☆109Jan 27, 2025Updated last year
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- ☆128Mar 19, 2026Updated 2 months ago
- Assembly and Annotation of the Human Immune Health Atlas☆24Aug 28, 2025Updated 9 months ago
- Map large-scale single cells to the exact spatial locations☆20Jun 12, 2025Updated 11 months ago
- ☆43Jan 12, 2026Updated 4 months ago
- ☆15Aug 5, 2022Updated 3 years ago
- ☆46May 4, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Gain biological insights using LLM.☆15Jan 26, 2026Updated 4 months ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated 10 months ago
- Reconstructing spatiotemporal dynamics from spatial transcriptome snapshots☆62Apr 12, 2026Updated last month
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆37Mar 10, 2025Updated last year
- ☆10Jul 3, 2018Updated 7 years ago
- inferring regulatory cellular dynamics☆141May 13, 2026Updated 3 weeks ago
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆30Oct 4, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- R package for single-cell comparative regulatory analysis☆10Jun 26, 2021Updated 4 years ago
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆74Oct 16, 2025Updated 7 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Jan 23, 2024Updated 2 years ago
- Camiel's scATAC-seq analysis pipeline☆14Apr 15, 2024Updated 2 years ago
- CellRank: dynamics from multi-view single-cell data☆451Updated this week
- ☆13Sep 30, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆50Mar 4, 2025Updated last year
- Constructing gene regulatory networks by integrating scRNA-seq and scATAC-seq data☆13Dec 7, 2021Updated 4 years ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆29Nov 6, 2025Updated 7 months ago
- Drug Response Estimation from single-cell Expression Profiles☆12Jan 5, 2024Updated 2 years ago
- ☆21Sep 8, 2023Updated 2 years ago
- SIMBA: SIngle-cell eMBedding Along with features☆20Jan 6, 2026Updated 5 months ago
- Multiome GRN inference.☆135Apr 10, 2026Updated last month