Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
☆31Oct 24, 2024Updated last year
Alternatives and similar repositories for CEFCON
Users that are interested in CEFCON are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- ☆20Aug 28, 2026Updated 3 weeks ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- ☆137Jul 11, 2026Updated 2 months ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- trajectory inference☆109Jan 27, 2025Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆131Aug 3, 2026Updated last month
- scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 datase…☆26Jun 23, 2026Updated 2 months ago
- ☆53May 18, 2026Updated 4 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆47Apr 12, 2023Updated 3 years ago
- Predict RNA velocity through deep learning☆73Dec 12, 2023Updated 2 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆16Jul 5, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- Group Technical Effects (GTE)☆16Oct 18, 2025Updated 11 months ago
- ☆43Jan 12, 2026Updated 8 months ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- inferring regulatory cellular dynamics☆190Sep 11, 2026Updated last week
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 3 months ago
- ☆46May 4, 2024Updated 2 years ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 10 months ago
- Single-cell perturbation analysis☆344Updated this week
- Gain biological insights using LLM.☆14Jan 26, 2026Updated 7 months ago
- ☆40Jun 24, 2025Updated last year
- ☆28Jul 4, 2026Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated last year
- ☆10Jul 3, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆70Jul 8, 2025Updated last year
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- LoRA finetuned LLM for single cell genomics research☆31Jun 30, 2026Updated 2 months ago
- Regulatory Temporal Interaction Network Inference☆16Mar 11, 2026Updated 6 months ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- ☆13Nov 19, 2023Updated 2 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆30Oct 4, 2021Updated 4 years ago