mkarikom / RSoptSCLinks
Cell-cell communication and lineage inference for scRNA-seq data
☆24Updated 2 years ago
Alternatives and similar repositories for RSoptSC
Users that are interested in RSoptSC are comparing it to the libraries listed below
Sorting:
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated 11 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆38Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆67Updated 8 months ago
- ☆49Updated 5 years ago
- ☆41Updated 4 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Inferring CNV data from single cell ATAC seq☆23Updated this week
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- ☆18Updated last year
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- ☆62Updated 5 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- SCDC☆45Updated last week
- ☆41Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago