mkarikom / RSoptSC
Cell-cell communication and lineage inference for scRNA-seq data
☆23Updated last year
Related projects ⓘ
Alternatives and complementary repositories for RSoptSC
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆32Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- ☆41Updated 4 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆46Updated this week
- ☆37Updated 3 years ago
- ☆57Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆43Updated 7 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆46Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆31Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- SCDC☆42Updated last year
- Functions for single cell data analysis☆26Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated 3 weeks ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆29Updated 8 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆44Updated 3 weeks ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆22Updated 4 years ago
- ☆39Updated 3 years ago
- Single-cell Orientation Tracing☆21Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆25Updated 3 weeks ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆25Updated 4 months ago
- scWGCNA☆54Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated last year
- R Package for Single-Cell Dataset Processing and Visualization☆53Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago