scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial data in an easy and efficient way.
☆325Sep 12, 2026Updated this week
Alternatives and similar repositories for scplotter
Users that are interested in scplotter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package that provides unified style and AI-friendly APIs for plotting.☆90Sep 6, 2026Updated last week
- ☆229Jun 13, 2026Updated 3 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆674Mar 11, 2026Updated 6 months ago
- An R package for single-cell and spatial omics analysis, integration, interpretation, and visualization.☆301Updated this week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆311Jun 30, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆246Mar 2, 2026Updated 6 months ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,200Updated this week
- Useful functions to make your scRNA-seq plot more cool!☆400Apr 18, 2026Updated 4 months ago
- ☆49Oct 29, 2025Updated 10 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 10 months ago
- Methods to discover gene programs on single-cell data☆208Jul 21, 2026Updated last month
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆670Mar 4, 2026Updated 6 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 9 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Methods for detecting doublets in single-cell sequencing data☆267Aug 31, 2026Updated 2 weeks ago
- ☆130Sep 4, 2025Updated last year
- One-step to Cluster and Visualize Gene Expression Matrix☆387Jun 25, 2026Updated 2 months ago
- Methods for decontamination of single cell data☆68Feb 16, 2025Updated last year
- AnnData interoperability in R☆196Updated this week
- reticulate-free single cell format conversion☆220Jul 10, 2026Updated 2 months ago
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆134Sep 8, 2026Updated last week
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆265Jul 8, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆447Aug 25, 2026Updated 3 weeks ago
- A tool for semi-automatic cell type classification☆503May 22, 2026Updated 3 months ago
- R package to infer biological activities from omics data using a collection of methods.☆304Dec 16, 2025Updated 8 months ago
- High dimensional weighted gene co-expression network analysis☆493Jun 16, 2026Updated 3 months ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆93Apr 15, 2026Updated 5 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 7 months ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 6 months ago
- Scaling Single Cell Analysis to Millions of Cells☆305Jul 13, 2026Updated 2 months ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An R package for visualising cell-cell interactions☆47Mar 16, 2026Updated 5 months ago
- ☆60Jan 2, 2024Updated 2 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆249Aug 7, 2024Updated 2 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 10 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- A R package for advanced single cell data viz☆74Aug 29, 2025Updated last year
- Gene set scoring for single-cell data☆207Sep 8, 2026Updated last week