Alternatives and similar repositories for scplotter

Users that are interested in scplotter are comparing it to the libraries listed below

• huayc09 / SeuratExtend
  ☆199Updated last month
• IanevskiAleksandr / sc-type
  ☆283Updated last year
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆285Updated this week
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆205Updated last month
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆307Updated 3 years ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆308Updated 2 months ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆206Updated last year
• navinlabcode / copykat
  ☆259Updated 3 months ago
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆238Updated 10 months ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆299Updated 2 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆236Updated 2 years ago
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆203Updated 8 months ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆304Updated 3 weeks ago
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆269Updated last week
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆199Updated last week
• neurorestore / Libra
  ☆181Updated 8 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆201Updated last week
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆316Updated 5 years ago
• smorabit / hdWGCNA
  High dimensional weighted gene co-expression network analysis
  ☆460Updated last week
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆254Updated this week
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆231Updated this week
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆161Updated 3 years ago
• aertslab / SCENICprotocol
  A scalable SCENIC workflow for single-cell gene regulatory network analysis
  ☆169Updated 3 years ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆152Updated 3 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆227Updated last year
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆213Updated 2 weeks ago
• junjunlab / ClusterGVis
  One-step to Cluster and Visualize Gene Expression Matrix
  ☆342Updated last week
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆216Updated last year
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• xuranw / MuSiC
  Multi-subject Single Cell Deconvolution
  ☆278Updated last year