Alternatives and similar repositories for scplotter:

Users that are interested in scplotter are comparing it to the libraries listed below

• huayc09 / SeuratExtend
  ☆134Updated 2 weeks ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆186Updated 2 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆191Updated this week
• dviraran / xCell
  Cell types enrichment analysis
  ☆194Updated 10 months ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆173Updated last week
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆249Updated this week
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆148Updated this week
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆92Updated 2 years ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆84Updated 5 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆198Updated 7 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆139Updated 3 years ago
• neurorestore / Libra
  ☆165Updated 7 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆271Updated 2 years ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated this week
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆122Updated 5 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆138Updated 3 weeks ago
• Danko-Lab / BayesPrism
  A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
  ☆179Updated 5 months ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆124Updated last year
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆269Updated last week
• 10XGenomics / loupeR
  Convert Seurat objects to 10x Genomics Loupe files.
  ☆118Updated 2 months ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆93Updated 6 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆200Updated 8 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆138Updated 3 years ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆239Updated last month
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆196Updated this week
• GreenleafLab / chromVAR
  chromatin Variability Across Regions (of the genome!)
  ☆172Updated 9 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆142Updated 4 months ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆169Updated 3 weeks ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆102Updated 2 weeks ago