Alternatives and similar repositories for scplotter

Users that are interested in scplotter are comparing it to the libraries listed below

• huayc09 / SeuratExtend
  ☆139Updated last week
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated last week
• Danko-Lab / BayesPrism
  A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression
  ☆188Updated last week
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆195Updated last week
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆86Updated 7 months ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆93Updated 2 years ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆279Updated 2 years ago
• neurorestore / Libra
  ☆171Updated 3 weeks ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆197Updated last year
• navinlabcode / copykat
  ☆235Updated 11 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆140Updated 3 years ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated 3 weeks ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆126Updated last year
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆258Updated 2 weeks ago
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆276Updated 2 weeks ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆183Updated last week
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆211Updated 2 weeks ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆127Updated 7 months ago
• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆169Updated 2 months ago
• IanevskiAleksandr / sc-type
  ☆266Updated 6 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆151Updated 3 weeks ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆181Updated 6 months ago
• sunduanchen / Scissor
  Scissor package
  ☆222Updated last year
• wheaton5 / souporcell
  Clustering scRNAseq by genotypes
  ☆182Updated 6 months ago
• 10XGenomics / loupeR
  Convert Seurat objects to 10x Genomics Loupe files.
  ☆123Updated 2 weeks ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆227Updated 2 years ago
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆187Updated last month
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆193Updated 3 weeks ago