BioBam / scMaSigPro
Implementation of MaSigPro for scRNA-Seq Data
☆13Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for scMaSigPro
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- ☆27Updated 3 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆48Updated last week
- ☆48Updated 4 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆13Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆36Updated 2 weeks ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆41Updated 9 months ago
- ☆42Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- ☆21Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆26Updated last year
- ☆39Updated 3 years ago
- ☆15Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated last year
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- scWGCNA☆55Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆26Updated this week
- ☆18Updated 8 months ago
- ☆37Updated 3 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆51Updated 2 years ago
- Repository for codes for the HBCA paper☆35Updated last year
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆14Updated this week
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year