petitmingchang / TO-GCNLinks
Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data
☆52Updated 2 years ago
Alternatives and similar repositories for TO-GCN
Users that are interested in TO-GCN are comparing it to the libraries listed below
Sorting:
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- release version☆54Updated 3 years ago
- Allele-specific alignment sorting☆60Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆64Updated last year
- A versatile aligning pipeline for bisulfite sequencing data☆66Updated 7 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 4 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- ☆50Updated 7 years ago
- ☆59Updated 4 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Some NGS workflow created by snakemake☆14Updated 10 months ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- Tutorial Website☆60Updated 4 years ago
- scripts for analyzing the CVDC data.☆20Updated 5 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆28Updated 6 years ago
- Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture…☆91Updated 3 years ago
- HiC uniform processing pipeline☆61Updated 2 years ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆74Updated 2 weeks ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆77Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- 4C-seq processing pipeline☆26Updated 8 months ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- An elegant package to visualize gene structures☆82Updated 2 years ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago