petitmingchang / TO-GCN
Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data
☆39Updated last year
Related projects: ⓘ
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆19Updated 2 years ago
- Tutorial Website☆51Updated 3 years ago
- trans-species prediction of TFBS in plants☆14Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆32Updated 3 weeks ago
- My own tools code for NGS data analysis (Next Generation Sequencing)☆29Updated 5 years ago
- Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.☆22Updated 2 years ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆61Updated 8 months ago
- an efficient Hi-C data processing pipeline☆15Updated 5 months ago
- ☆51Updated 6 years ago
- A Perl/R pipeline for plotting metagenes☆34Updated 3 years ago
- Allele-specific alignment sorting☆52Updated last year
- ☆49Updated 3 years ago
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆15Updated 6 months ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated last month
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆49Updated last year
- release version☆46Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆44Updated last year
- ☆19Updated 5 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- Scripts and data for Duran & Thiergart et al. Cell, 2018☆24Updated 5 years ago
- 4C-seq processing pipeline☆22Updated 5 months ago
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆64Updated 2 weeks ago
- BS-seq analysis pipeline☆38Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆23Updated 5 years ago
- tools to find circRNAs in RNA-seq data☆40Updated 6 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆26Updated 5 years ago
- QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis☆64Updated 4 years ago
- NLR-Annotator upload☆56Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆43Updated last year