soumelis-lab / ICELLNET

Related projects ⓘ

Alternatives and complementary repositories for ICELLNET

• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆25Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆44Updated 3 weeks ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆24Updated 2 weeks ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆22Updated 2 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆21Updated 9 months ago
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 3 years ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆25Updated 3 years ago
• ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage
  Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…
  ☆9Updated 4 years ago
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆15Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆27Updated 5 months ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆19Updated this week
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated last year
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆19Updated 4 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆21Updated 10 months ago
• mbourgey / scRNA_GBM
  analysis script for GBM single cell RNA seq data
  ☆17Updated 3 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆20Updated 7 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆14Updated 9 months ago
• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 2 years ago
• OscarGVelasco / ClusterFoldSimilarity
  Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
  ☆16Updated 4 months ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 2 weeks ago
• BaderLab / CCInx
  Build predicted cell-cell interaction networks from single-cell data.
  ☆9Updated last year
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆13Updated 4 months ago
• Olaniru / human-fetal-pancreas
  analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages
  ☆9Updated last year
• ventolab / HGDA
  ☆21Updated 5 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆17Updated 9 months ago
• JinmiaoChenLab / ezSingleCell2
  ☆37Updated 10 months ago
• saeyslab / NicheNet_LiverCellAtlas
  Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022
  ☆8Updated 2 years ago
• wenweixiong / MARVEL
  ☆40Updated 3 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆38Updated 8 months ago