soumelis-lab / ICELLNET
☆19Updated 8 months ago
Alternatives and similar repositories for ICELLNET:
Users that are interested in ICELLNET are comparing it to the libraries listed below
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- Code used to process the data of the HBCA project☆22Updated 11 months ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆29Updated last month
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- A record of the analysis pipelines used to create the HTAPP data☆31Updated last month
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆12Updated 3 months ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- ☆12Updated 7 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated last month
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Functional Annotation for Single-Cell Transcriptomics☆10Updated 6 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 3 months ago
- Scripts from the GBM cellular states paper☆18Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆20Updated 10 months ago
- scID☆13Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆14Updated 4 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 9 months ago