☆37Feb 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for DISCOtoolkit
Users that are interested in DISCOtoolkit are comparing it to the libraries listed below
Sorting:
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆11May 31, 2024Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year
- R code used to analyze single cell PDAC data☆41Jun 29, 2024Updated last year
- 📦R包:Make TCGA download and prepare easy!☆153Sep 19, 2025Updated 5 months ago
- A package for reference mapping and nice visualization☆24Dec 16, 2025Updated 2 months ago
- ☆10Jul 9, 2024Updated last year
- An R package for visualising cell-cell interactions☆46Aug 14, 2024Updated last year
- Optimizing weighted gene co-expression network analysis (WGCNA, an R package) with a multi-threaded calculation of the Topological Overla…☆12Jan 5, 2022Updated 4 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Tools for metabolomic data☆35Oct 4, 2024Updated last year
- ☆45Jan 11, 2024Updated 2 years ago
- Senescent Cell Identification☆49Feb 22, 2024Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆55Jan 6, 2025Updated last year
- ☆11Jun 10, 2024Updated last year
- Automated ingestion and conversion of various single-cell data formats, within and across species☆13Jan 26, 2026Updated last month
- ☆11Jun 25, 2024Updated last year
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- ☆11May 24, 2024Updated last year
- ☆15Feb 20, 2025Updated last year
- Pan-Cancer Single Cell Classifier☆84May 30, 2024Updated last year
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated 11 months ago
- ☆36Nov 26, 2025Updated 3 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆132Sep 6, 2024Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Aug 17, 2022Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Aug 16, 2021Updated 4 years ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- ☆13Sep 30, 2024Updated last year
- Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using AnnData h5ad files.☆12Oct 1, 2024Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Jul 23, 2025Updated 7 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆65Oct 16, 2025Updated 4 months ago
- ☆13Jan 8, 2026Updated last month
- Codes for our NPNT paper at Nature Metabolism☆16Feb 9, 2024Updated 2 years ago
- JEME method for predicting enhancer targets☆11Jul 15, 2017Updated 8 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆19Mar 6, 2024Updated last year
- CASSIA: A multiagent llm based single cell Annottaion framework☆84Feb 7, 2026Updated 3 weeks ago