Alternatives and similar repositories for DISCOtoolkit

Users that are interested in DISCOtoolkit are comparing it to the libraries listed below

• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆84Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆76Updated 2 months ago
• bio-Pixel / panVC
  ☆54Updated last year
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆28Updated last year
• aliceygao / pan-Fibroblast
  ☆51Updated last year
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated 2 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆22Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆31Updated 8 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆75Updated last year
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆69Updated 2 years ago
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆23Updated 2 years ago
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆52Updated 4 years ago
• KChen-lab / METAFlux
  ☆76Updated last year
• JinmiaoChenLab / ezSingleCell2
  ☆57Updated last year
• Teichlab / HCA_Heart_ver2
  ☆40Updated 2 years ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated last month
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆94Updated 10 months ago
• guangchunhan / LUAD_Code
  ☆23Updated 2 years ago
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated 2 years ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆43Updated 2 years ago
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆63Updated 2 years ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆49Updated 4 months ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆51Updated 2 weeks ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago
• campbio / decontX
  Methods for decontamination of single cell data
  ☆49Updated 8 months ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆40Updated last year
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆127Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆58Updated 3 weeks ago