Alternatives and similar repositories for UTechSCB-SCHNAPPs:

Users that are interested in UTechSCB-SCHNAPPs are comparing it to the libraries listed below

• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆36Updated 2 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆54Updated last month
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆42Updated last year
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆26Updated last year
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆42Updated 3 months ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆19Updated 2 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 7 months ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆41Updated 3 years ago
• BaderLab / Tempora
  Pathway-based trajectory inference method for time-series scRNAseq data
  ☆25Updated 3 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆68Updated 9 months ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆34Updated 3 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆26Updated 6 months ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆40Updated 3 weeks ago
• saeyslab / FlowSOM
  Using self-organizing maps for visualization and interpretation of cytometry data
  ☆25Updated 6 months ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆45Updated 11 months ago
• niaid / covid19-time-resolved
  This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…
  ☆15Updated 3 years ago
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆45Updated 3 years ago
• shenorrLabTRDF / cellAlign
  ☆38Updated 4 years ago
• markrobinsonuzh / cytofWorkflow
  ☆16Updated 9 months ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆24Updated last year
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆51Updated last year
• phipsonlab / speckle
  R package for analysing single cell data
  ☆50Updated 2 years ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆57Updated 2 months ago
• kordastilab / ImmunoCluster
  ☆27Updated 3 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆36Updated 2 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 3 months ago
• Teichlab / cellity
  ☆37Updated 8 years ago