C3BI-pasteur-fr / UTechSCB-SCHNAPPsLinks
Shiny app for the analysis of single cell data
☆26Updated 4 months ago
Alternatives and similar repositories for UTechSCB-SCHNAPPs
Users that are interested in UTechSCB-SCHNAPPs are comparing it to the libraries listed below
Sorting:
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 6 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Toolkit for Single-Cell Velocity☆58Updated last week
- Brings SingleCellExperiment objects to the tidyverse☆36Updated this week
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- Normalize CITEseq Data☆66Updated 3 months ago
- Cell type pipes for R☆51Updated last year
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆29Updated 2 years ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- An R-based interface for loom files☆66Updated 5 years ago
- Single-cell analysis with non-negative matrix factorization☆45Updated last week
- R package for Bioconductor submission☆35Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- ☆16Updated last year
- An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.☆27Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 weeks ago
- Tools for manipulating annotated data matrices☆93Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Collection of cell type reference datasets.☆58Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆30Updated 2 months ago
- Explore and share your scRNAseq clustering results☆50Updated last year
- Clone of the Bioconductor repository for the scran package.☆42Updated 10 months ago