Alternatives and similar repositories for SPART

Users that are interested in SPART are comparing it to the libraries listed below

• Argonum-Clever2 / mike
  ☆33Updated 10 months ago
• simon19891216 / CentIER
  ☆44Updated 6 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆25Updated 11 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆40Updated 7 years ago
• Zhenlisme / heliano
  HELIANO is a software for detection and classification of Helitron-like elements.
  ☆32Updated 8 months ago
• xjtu-omics / HiCAT
  HiCAT new project
  ☆31Updated 8 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated 2 years ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 11 months ago
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆21Updated 2 years ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆44Updated 4 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆25Updated last month
• Sh1ne111 / KMERIA
  A KMER-based genome-wIde Assocation testing approach on polyploids
  ☆41Updated last month
• tangerzhang / calc_switchErr
  ☆31Updated 10 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• zhangrengang / subgenome_phasing_example
  An Example of Subgenome Phasing for Complex Allopolyploidy
  ☆15Updated 3 months ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆42Updated 2 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆33Updated 2 years ago
• ellenbell / FasTE
  A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…
  ☆27Updated 3 years ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆38Updated last week
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆52Updated 8 months ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆41Updated 2 weeks ago
• amsession / Kmer-based-Subgenome-Mapping
  ☆21Updated last year
• JM-SONG / GenomeSyn
  ☆28Updated 3 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆38Updated 3 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆68Updated 4 years ago
• Dee-chen / Tree2gd
  ☆45Updated 3 years ago
• panlab-bioinfo / TRFill
  a gap-filling tools of genome in complex region.
  ☆24Updated last month
• sinhakrishnendu / babappa
  BAsh-Based Automated Parallel Positive selection Analysis
  ☆16Updated 4 months ago
• baozg / phased-assembly-check
  ☆32Updated last year