qclian / Pan_Ath
Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range"
☆16Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for Pan_Ath
- scripts for the project of seven thaliana genomes assembly☆37Updated 3 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆29Updated 2 months ago
- ☆15Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- ☆21Updated 2 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆21Updated 2 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆17Updated 10 months ago
- Scripts that used in our chicken T2T manuscript.☆18Updated last year
- ☆21Updated 2 months ago
- Centromics: visualing centromeres with multiple omics data☆22Updated this week
- ☆20Updated 3 months ago
- ☆28Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆27Updated last year
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆36Updated 4 months ago
- Genome haplotype assembly and assessment method☆11Updated 11 months ago
- Resistify is a command line program that identifies and classifies NLRs from protein sequences☆26Updated this week
- ☆24Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆33Updated last month
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format☆27Updated last month
- A genome assembly assessment pipeline.☆36Updated 11 months ago
- ☆28Updated 2 months ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆24Updated 2 weeks ago
- ☆20Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆11Updated last month
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- Inferring natural selection by comparative population genomic analysis across species☆21Updated last year
- Computational Analysis of Gene Expression Evolution☆36Updated last week
- ☆20Updated 8 months ago
- ☆36Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 3 years ago