gghic makes visualization of Hi-C/-like data easily in R
☆29Jan 23, 2026Updated 6 months ago
Alternatives and similar repositories for gghic
Users that are interested in gghic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- trackc aims to produce beautiful genome tracks that are highly customizable☆19Jun 6, 2026Updated last month
- ☆15Apr 16, 2026Updated 3 months ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆18Nov 29, 2024Updated last year
- Extract Sequence from Genome According to Annotation File☆40Apr 16, 2025Updated last year
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analyzing Hi-C data in R with HiCExperiment objects☆16Apr 29, 2026Updated 2 months ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆29Apr 24, 2026Updated 3 months ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46May 23, 2026Updated 2 months ago
- Variant Calling for the HPRC2☆16May 26, 2026Updated 2 months ago
- ☆12Jun 7, 2024Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 10 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆45Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆24Nov 19, 2025Updated 8 months ago
- ☆45Dec 11, 2025Updated 7 months ago
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆28Jul 29, 2025Updated last year
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Jul 1, 2026Updated 3 weeks ago
- ☆42May 19, 2025Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆27Mar 4, 2025Updated last year
- Telomere compliment tools☆26Nov 17, 2025Updated 8 months ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆29Apr 16, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Mar 2, 2024Updated 2 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- A chromosome-level polyploid phasing scaffolding tool☆18Updated this week
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- Mosaic Genome Assembler☆26Jul 17, 2026Updated last week
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last month
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 3 months ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆78Jul 22, 2025Updated last year
- ☆10Aug 21, 2025Updated 11 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆27May 18, 2024Updated 2 years ago
- ☆14Dec 15, 2019Updated 6 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Aug 4, 2022Updated 3 years ago
- ☆16Apr 3, 2023Updated 3 years ago