gghic makes visualization of Hi-C/-like data easily in R
☆27Jan 23, 2026Updated 2 months ago
Alternatives and similar repositories for gghic
Users that are interested in gghic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆26Feb 9, 2026Updated last month
- Blazing fast toolkit to work with .hic and .cool files☆44Updated this week
- trackc aims to produce beautiful genome tracks that are highly customizable☆17Jan 21, 2026Updated 2 months ago
- Chromatin States Map in mouse embryonic stem cell☆19Apr 11, 2018Updated 7 years ago
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆21Jul 29, 2025Updated 8 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆16Dec 25, 2024Updated last year
- ☆28Oct 20, 2023Updated 2 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 4 months ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆36Nov 25, 2024Updated last year
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- Centromics: visualing centromeres with multiple omics data☆25Mar 4, 2025Updated last year
- ☆24Dec 15, 2025Updated 3 months ago
- ☆12Jun 7, 2024Updated last year
- Creating alignment plots from bam files☆121Mar 13, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12May 31, 2023Updated 2 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆44Mar 13, 2026Updated 2 weeks ago
- Analyzing Hi-C data in R with HiCExperiment objects☆16Mar 18, 2025Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Jun 6, 2024Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆15Oct 23, 2024Updated last year
- High-performance stochastic modeling of DNA loop extrusion interactions☆18Dec 22, 2025Updated 3 months ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- ☆17Nov 19, 2025Updated 4 months ago
- Genome annotation pre-publication results☆26Updated this week
- A pipeline for isoseq☆23Jun 8, 2018Updated 7 years ago
- HAlign 4: A New Strategy for Rapidly Aligning Millions of Sequences☆17Mar 13, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Extract Sequence from Genome According to Annotation File☆40Apr 16, 2025Updated 11 months ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Mar 25, 2022Updated 4 years ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆28Aug 14, 2024Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- ☆21Updated this week