Alternatives and similar repositories for iTAK:

Users that are interested in iTAK are comparing it to the libraries listed below

• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 3 weeks ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 3 years ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆44Updated 9 months ago
• yongzhiyang2012 / WGDdetector
  ☆21Updated 5 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated 2 months ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆25Updated 6 years ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆51Updated this week
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆37Updated last year
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆35Updated last year
• BGI-Qingdao / stlfr2supernova_pipeline
  A pipeline to de novo assemble the stLFR reads using Supernova Assembler
  ☆20Updated last year
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆28Updated 3 years ago
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆46Updated 2 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• hillerlab / GeneLossPipe
  ☆24Updated 2 years ago
• Nextomics / nextsv
  ☆33Updated 9 months ago
• 4ureliek / TEanalysis
  Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.
  ☆25Updated 5 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆34Updated 2 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• fbemm / onefc-oneasm
  Simple code snippets and data for the One Flowcell - One Assembly study
  ☆36Updated 7 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• Zhanmengtao / bin
  scripts
  ☆15Updated 6 years ago
• Sun-Yanbo / FasParser
  A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data
  ☆30Updated 3 years ago
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆24Updated 8 months ago
• vgteam / giraffe-sv-paper
  ☆42Updated 8 months ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆29Updated 3 months ago
• liangjiaoxue / PythonNGSTools
  Scripts for NGS processing
  ☆17Updated 7 years ago