Alternatives and similar repositories for iTAK:

Users that are interested in iTAK are comparing it to the libraries listed below

• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• yongzhiyang2012 / WGDdetector
  ☆21Updated 5 years ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆54Updated this week
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆26Updated 6 years ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 3 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆43Updated last year
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆31Updated last year
• pinbo / SNP_Primer_Pipeline
  ☆21Updated 2 years ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆40Updated 2 weeks ago
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 2 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆44Updated last year
• vgteam / giraffe-sv-paper
  ☆42Updated 11 months ago
• WenchaoLin / GCcalc
  Calculate circos format data of GC content and GC skew from genome data.
  ☆11Updated 10 years ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆30Updated 3 years ago
• LAILAB-CAU / update-Mo17
  ☆24Updated 2 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆30Updated 2 weeks ago
• hillerlab / CESAR2.0
  ☆28Updated 2 years ago
• BGI-shenzhen / BamDeal
  BamDeal: a comprehensive toolkit for bam manipulation
  ☆53Updated 2 years ago
• liangjiaoxue / PythonNGSTools
  Scripts for NGS processing
  ☆17Updated 7 years ago
• baoxingsong / GEAN
  This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.
  ☆45Updated 2 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 6 months ago
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆25Updated 2 months ago
• tsackton / ratite-genomics
  Scripts and other material for the assembly and analysis of ratite genomes.
  ☆26Updated 2 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year