baduelp / publicLinks
☆16Updated last year
Alternatives and similar repositories for public
Users that are interested in public are comparing it to the libraries listed below
Sorting:
- ☆14Updated 6 years ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- ☆29Updated 2 years ago
- ☆14Updated 3 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- ☆16Updated 5 years ago
- ☆43Updated last year
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 6 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆13Updated 3 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 4 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated this week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- A long-read SV calling pipeline☆12Updated 4 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆35Updated 7 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- my commonly used perl script☆19Updated 5 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated 2 years ago
- The repository for codes developed to generated the Maize NC358 assemblies and analyses.☆10Updated 5 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Updated 12 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- ☆24Updated 2 years ago