baduelp / publicLinks
☆16Updated 10 months ago
Alternatives and similar repositories for public
Users that are interested in public are comparing it to the libraries listed below
Sorting:
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 2 months ago
- ☆27Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- ☆15Updated 5 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆13Updated 2 months ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- ☆42Updated last year
- ☆14Updated 6 years ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated 7 months ago
- ☆30Updated 7 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- ☆31Updated 5 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated this week
- ☆14Updated 3 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- B73Ab10 genome assembly methods☆16Updated 3 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27Updated 4 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 11 months ago
- A long-read SV calling pipeline☆12Updated 4 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 3 years ago
- ☆27Updated 4 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- ☆23Updated last year
- scripts and intermediate files used to annotate TEs in Jiao et al.☆35Updated 7 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- Plant genome assembly and annotation pipeline using snakemake☆46Updated 3 months ago