Convert RepeatMasker ".out" file into a gff3 with colors!!!
☆24Aug 20, 2020Updated 5 years ago
Alternatives and similar repositories for rm2gff3
Users that are interested in rm2gff3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- ☆15Jul 21, 2022Updated 3 years ago
- Distribution of TEs and their relationship to genes in host genome☆24Jun 20, 2023Updated 2 years ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- An easy-to-use python package can be used for genomic visual analysis☆21Apr 20, 2024Updated last year
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆15Mar 16, 2026Updated last week
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Apr 30, 2025Updated 10 months ago
- ☆38Dec 29, 2025Updated 2 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- Visualising discordant reads☆15Sep 2, 2015Updated 10 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84May 25, 2021Updated 4 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 11 months ago
- Genome alignment and synteny plots☆34Jun 5, 2023Updated 2 years ago
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 3 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Jan 29, 2024Updated 2 years ago
- SRF: Satellite Repeat Finder☆103Jan 8, 2024Updated 2 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Mar 11, 2019Updated 7 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 2 months ago
- ☆18Jan 29, 2025Updated last year
- Easy to Annotate Helitrons Unix-like command line.☆10Feb 14, 2024Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆57Jul 19, 2025Updated 8 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Neural network classification of TE☆97Oct 9, 2025Updated 5 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆199Mar 12, 2026Updated last week
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 6 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago