clemgoub / rm2gff3
Convert RepeatMasker ".out" file into a gff3 with colors!!!
☆19Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for rm2gff3
- ☆15Updated 2 years ago
- ☆20Updated 3 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆12Updated last year
- ☆24Updated 3 years ago
- assembly evaluation tool☆34Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆19Updated 4 months ago
- ☆28Updated 2 months ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- A Hi-C scaffolding method☆22Updated 2 years ago
- ☆20Updated 8 months ago
- Centromics: visualing centromeres with multiple omics data☆22Updated 2 weeks ago
- ☆22Updated 2 months ago
- ☆24Updated 10 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- Genome alignment and synteny plots☆27Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆14Updated 10 months ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago
- ☆22Updated last year
- Toolkit for evolutionary analyses of linkage groups☆23Updated 4 months ago
- ☆29Updated last week
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆35Updated last year
- ☆36Updated last year
- ☆21Updated 2 years ago
- Domain based annotation of transposable elements☆19Updated last month
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year