long read RNA-seq quantification
☆116Jul 20, 2026Updated this week
Alternatives and similar repositories for oarfish
Users that are interested in oarfish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The Isoforms from Single-Cell; Long-read Expression Suite☆40Jan 14, 2025Updated last year
- A Rust library and command line tool for working with genomic ranges and their data.☆102May 29, 2024Updated 2 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆233Updated this week
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆93Jun 26, 2026Updated 3 weeks ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆20Oct 5, 2022Updated 3 years ago
- an API for intersections of genomic data☆148Mar 12, 2026Updated 4 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 4 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆39Jul 7, 2026Updated 2 weeks ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆107Jun 25, 2026Updated 3 weeks ago
- A Rust implementation of SSHash☆19Jul 2, 2026Updated 2 weeks ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Updated this week
- ☆37Jun 26, 2026Updated 3 weeks ago
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 4 months ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆275Updated this week
- Technology agnostic long read analysis pipeline for transcriptomes☆160Jan 25, 2024Updated 2 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆251Jul 14, 2026Updated last week
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆257Jul 10, 2026Updated last week
- End-guided RNA assembler☆15Dec 2, 2025Updated 7 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 10 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆42Jul 1, 2026Updated 2 weeks ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆187Jul 1, 2026Updated 2 weeks ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆46Dec 8, 2025Updated 7 months ago
- SingleCell Nanopore sequencing data analysis☆69May 30, 2025Updated last year
- A program for the analysis of single cell nanopore long read data☆22Jul 1, 2025Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆123Updated this week
- ☆13May 27, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Fast genomics quality control tools for sequencing data, written in Rust.☆118Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Feature-rich Python implementation of the tximport package for gene count estimation.☆44Jul 10, 2026Updated last week
- ☆67Mar 19, 2026Updated 4 months ago
- A high-performance BigWig and BigBed library in Rust☆118Jul 6, 2026Updated 2 weeks ago
- A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.☆63Jun 26, 2026Updated 3 weeks ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆232Sep 6, 2025Updated 10 months ago
- A very fast interval tree data structure☆134Feb 3, 2025Updated last year
- De novo construction of isoforms from long-read data☆38Jul 2, 2026Updated 2 weeks ago