Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
☆82Jul 28, 2026Updated this week
Alternatives and similar repositories for Wakhan
Users that are interested in Wakhan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for somatic structural variant calling using long reads☆174Jun 8, 2026Updated last month
- Somatic structural variant caller for long-read data☆92Jun 30, 2026Updated 3 weeks ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- Workflow for somatic variant calling of long read data☆26Jul 17, 2026Updated last week
- Tandem repeat expansion detection or genotyping from long-read alignments☆165Mar 25, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆129Jul 22, 2026Updated last week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆92Jul 1, 2026Updated 3 weeks ago
- SV detection tool for nanopore sequence reads☆98Mar 25, 2026Updated 4 months ago
- CoRAL: Reconstruction of focal amplifications with long reads☆31Updated this week
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆107Jun 25, 2026Updated last month
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 2 months ago
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 4 months ago
- ☆30Mar 1, 2026Updated 4 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tandem repeat genotyping with long reads☆38Sep 23, 2025Updated 10 months ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- CAncer Standards Long-read Evaluation☆62Jun 26, 2026Updated last month
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Jun 26, 2026Updated last month
- ☆14May 2, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆40Jul 16, 2026Updated last week
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆268Updated this week
- Evaluating genome assemblies☆123Mar 3, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pipeline to convert a haploid assembly into diploid☆112Jan 23, 2025Updated last year
- Tools for plotting methylation data in various ways☆194Jun 13, 2026Updated last month
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 2 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- Jasmine: SV Merging Across Samples☆260Dec 20, 2024Updated last year
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- bioinformatics toolkit in rust☆107Jul 16, 2026Updated last week
- Phased assembly variant caller☆142Dec 4, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆17Jul 1, 2026Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆126Jul 10, 2026Updated 2 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆383Jul 9, 2026Updated 2 weeks ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆43Apr 16, 2026Updated 3 months ago
- Graph-based assembly phasing☆99Nov 25, 2025Updated 8 months ago
- Tool to flag foldback and chimeric artifacts in long-read sequence alignment files☆42Jul 1, 2026Updated 3 weeks ago