Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
☆89Sep 9, 2026Updated 2 weeks ago
Alternatives and similar repositories for Wakhan
Users that are interested in Wakhan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for somatic structural variant calling using long reads☆179Jun 8, 2026Updated 3 months ago
- Somatic structural variant caller for long-read data☆94Jun 30, 2026Updated 2 months ago
- Copy number caller for long read data including SNV utilization☆71Mar 31, 2025Updated last year
- Workflow for somatic variant calling of long read data☆28Updated this week
- Tandem repeat expansion detection or genotyping from long-read alignments☆173Mar 25, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆132Updated this week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆97Sep 9, 2026Updated 2 weeks ago
- SV detection tool for nanopore sequence reads☆98Mar 25, 2026Updated 6 months ago
- CoRAL: Reconstruction of focal amplifications with long reads☆31Aug 22, 2026Updated last month
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆111Jun 25, 2026Updated 3 months ago
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 4 months ago
- Tumor-normal variant calling workflow using HiFi reads☆31Mar 4, 2026Updated 6 months ago
- ☆31Mar 1, 2026Updated 6 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆36Oct 27, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tandem repeat genotyping with long reads☆40Sep 23, 2025Updated last year
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- CAncer Standards Long-read Evaluation☆67Jul 27, 2026Updated 2 months ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆96Aug 2, 2026Updated last month
- ☆14May 2, 2025Updated last year
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated 2 months ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆274Updated this week
- Evaluating genome assemblies☆127Mar 3, 2026Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Pipeline to convert a haploid assembly into diploid☆113Jan 23, 2025Updated last year
- Tools for plotting methylation data in various ways☆198Sep 17, 2026Updated last week
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 4 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- bioinformatics toolkit in rust☆108Aug 16, 2026Updated last month
- Phased assembly variant caller☆146Dec 4, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Sep 7, 2026Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆127Jul 10, 2026Updated 2 months ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆392Sep 15, 2026Updated last week
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆45Apr 16, 2026Updated 5 months ago
- De novo construction of isoforms from long-read data☆46Sep 9, 2026Updated 2 weeks ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 10 months ago