KolmogorovLab / WakhanLinks
Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
☆57Updated last month
Alternatives and similar repositories for Wakhan
Users that are interested in Wakhan are comparing it to the libraries listed below
Sorting:
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- Copy number caller for long read data including SNV utilization☆65Updated 4 months ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆59Updated last week
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆76Updated 4 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆42Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆29Updated 3 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- WDL workflows for variant calling and assembly using ONT☆35Updated this week
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ☆81Updated 5 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- ☆49Updated 11 months ago
- ☆48Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- A program for assessing the T2T genome continuity☆83Updated last month
- ☆23Updated last week
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- Tumor-normal variant calling workflow using HiFi reads☆20Updated 2 months ago
- HiFi-based caller for highly similar paralogous genes☆48Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last month
- Variant annotation and merging pipeline☆39Updated 2 weeks ago
- Toolkit for calling structural variants using short or long reads☆107Updated last week
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- Tools for the analysis of structural variation in genomes☆80Updated last year
- Long-read splice alignment with high accuracy☆64Updated 10 months ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- python plotly Circos from VCF☆38Updated last year