KolmogorovLab / Wakhan
Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
☆49Updated this week
Alternatives and similar repositories for Wakhan:
Users that are interested in Wakhan are comparing it to the libraries listed below
- Set of tools to manipulate and visualize modified base bam files☆55Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆48Updated last week
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆43Updated 2 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆73Updated last month
- Copy number caller for long read data including SNV utilization☆63Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Somatic structural variant caller for long-read data☆65Updated last week
- ☆79Updated 2 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Toolkit for calling structural variants using short or long reads☆103Updated 2 weeks ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆41Updated 6 months ago
- ☆40Updated 2 months ago
- A program for assessing the T2T genome continuity☆72Updated 3 weeks ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated this week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 3 weeks ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Variant annotation and merging pipeline☆34Updated last month
- ☆76Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- ☆48Updated 10 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆37Updated last month
- ☆46Updated 8 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month