PacificBiosciences / SVTopoLinks
Complex structural variant visualization for HiFi sequencing data
☆42Updated 3 weeks ago
Alternatives and similar repositories for SVTopo
Users that are interested in SVTopo are comparing it to the libraries listed below
Sorting:
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆39Updated this week
- Joint structural variant and copy number variant caller for HiFi sequencing data☆64Updated 2 weeks ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆37Updated 6 months ago
- ☆25Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 2 months ago
- Easy genomic regions for short-read variant calling☆45Updated 2 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- a lexicographically-based GTF/GFF sorter☆35Updated 6 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 3 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆50Updated 8 months ago
- Structural variant (SV) analysis tools☆39Updated last year
- ☆33Updated 3 years ago
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆81Updated this week
- ☆21Updated 8 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆59Updated this week
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 5 months ago
- A battery of methylation tools for PacBio HiFi reads☆43Updated last week
- ☆21Updated 2 years ago
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- Kmer Analysis of Pileups for Genotyping☆33Updated this week
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆80Updated 7 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- Variant annotation and merging pipeline☆39Updated 3 months ago
- ☆45Updated last week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆32Updated 3 weeks ago