PacificBiosciences / SVTopoLinks
Complex structural variant visualization for HiFi sequencing data
☆35Updated 2 months ago
Alternatives and similar repositories for SVTopo
Users that are interested in SVTopo are comparing it to the libraries listed below
Sorting:
- A Nextflow workflow to generate lift over files for any pair of genomes☆67Updated last week
- A VCF comparison engine for structual variant benchmarking☆24Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆54Updated last week
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 7 months ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 7 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 3 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 2 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 2 months ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated this week
- WDL workflows for variant calling and assembly using ONT☆35Updated 3 weeks ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- vembrane filters VCF records using python expressions☆60Updated this week
- ☆20Updated last year
- CAncer Standards Long-read Evaluation☆28Updated 4 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 6 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 weeks ago
- ☆41Updated 9 months ago
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆21Updated 4 months ago
- A battery of methylation tools for PacBio HiFi reads☆36Updated 3 weeks ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated this week
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago