Alternatives and similar repositories for SCASL

Users that are interested in SCASL are comparing it to the libraries listed below

• satijalab / PASTA
  ☆21Updated last year
• wenweixiong / MARVEL
  ☆51Updated last year
• gxiaolab / scAllele
  ☆38Updated last month
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆53Updated 3 months ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆86Updated 2 years ago
• UPSUTER / GEMLI
  ☆32Updated 8 months ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• lkmklsmn / MitoTrace
  ☆18Updated last year
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆52Updated last year
• snehamitra / SCARlink
  ☆59Updated 3 months ago
• bvaldebenitom / SoloTE
  ☆32Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆76Updated last month
• TheHumphreysLab / plot1cell
  ☆115Updated last month
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆36Updated 6 years ago
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆109Updated 10 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• cxzhu / Paired-Tag
  Analysis of Paired-Tag datasets
  ☆43Updated last year
• BernsteinLab / Myeloid-Glioma
  Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments
  ☆20Updated 4 months ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆37Updated 4 years ago
• atarashansky / SAMap
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
  ☆82Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆23Updated last year
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 2 years ago
• KChen-lab / METAFlux
  ☆73Updated last year
• RegnerM2015 / scENDO_scOVAR_2020
  This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…
  ☆47Updated last year
• quadbio / RNAseq_tutorial
  ☆31Updated 11 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 11 months ago
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆31Updated 2 years ago