Alternatives and similar repositories for SCASL

Users that are interested in SCASL are comparing it to the libraries listed below

• satijalab / PASTA
  ☆21Updated last year
• wenweixiong / MARVEL
  ☆51Updated last year
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆56Updated last year
• bvaldebenitom / SoloTE
  ☆32Updated last year
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆49Updated last year
• atarashansky / SAMap
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
  ☆84Updated last year
• cxzhu / Paired-Tag
  Analysis of Paired-Tag datasets
  ☆43Updated last year
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆114Updated last year
• lkmklsmn / MitoTrace
  ☆18Updated last year
• UPSUTER / GEMLI
  ☆32Updated 9 months ago
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆54Updated 4 months ago
• BernsteinLab / Myeloid-Glioma
  Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments
  ☆21Updated 6 months ago
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆31Updated last week
• gxiaolab / scAllele
  ☆39Updated 2 months ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆20Updated last year
• quadbio / RNAseq_tutorial
  ☆33Updated last year
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆20Updated 2 weeks ago
• lrylaarsdam / amethyst
  A comprehensive toolkit for single-cell methylation sequencing data analysis
  ☆28Updated 3 weeks ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆77Updated 6 months ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 3 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆23Updated last year
• snehamitra / SCARlink
  ☆59Updated 4 months ago
• NCICCGPO / scATAC-Manuscript
  ☆14Updated last year
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• crickbabs / DRB_TT-seq
  Scripts for the analysis of TT-seq and DRB/TT-seq data.
  ☆11Updated 5 years ago
• HYsxe / PRINT
  ☆36Updated last year
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆63Updated 2 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆86Updated 2 years ago
• MGI-tech-bioinformatics / DNBelab_C_Series_scRNA-analysis-software
  An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
  ☆35Updated 2 years ago