splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq
☆20Nov 28, 2025Updated 3 months ago
Alternatives and similar repositories for splicekit
Users that are interested in splicekit are comparing it to the libraries listed below
Sorting:
- pybio is a comprehensive Python framework designed to streamline genomics operations. It offers a direct interface to Ensembl genome asse…☆14Oct 28, 2025Updated 4 months ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆21Mar 30, 2024Updated last year
- interactive visualization of single-cell transcriptomes☆11Dec 23, 2023Updated 2 years ago
- Exploring Isoform-specific interactions☆11Sep 16, 2025Updated 5 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Jan 29, 2026Updated last month
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 2 months ago
- ☆12Oct 23, 2023Updated 2 years ago
- Single-cell Iso Prep☆17Oct 28, 2023Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Feb 21, 2024Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆20Aug 9, 2022Updated 3 years ago
- ☆17Jul 19, 2024Updated last year
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated 7 months ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆31Nov 6, 2025Updated 3 months ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Jul 20, 2024Updated last year
- BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis☆50Feb 12, 2026Updated 2 weeks ago
- iread☆25Jul 16, 2021Updated 4 years ago
- ☆25Aug 1, 2022Updated 3 years ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23May 20, 2023Updated 2 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆34Sep 16, 2025Updated 5 months ago
- My computational biology course as it evolves in real time☆14Aug 31, 2021Updated 4 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 5 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 9 months ago
- Quantitative Genetics Tools for Mapping Trait Variation to Mechanisms, Therapeutics, and Interventions - Webinar Series☆29Jul 23, 2023Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Feb 28, 2022Updated 4 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆84Jun 6, 2025Updated 8 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆14Feb 4, 2026Updated 3 weeks ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- Bayesian No-Effect-Concentration estimation in R☆14Dec 19, 2025Updated 2 months ago
- ☆35Dec 19, 2023Updated 2 years ago
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- ☆10Oct 24, 2024Updated last year
- Services and guidelines for normalizing drug and other therapy terms☆13Updated this week
- Step by step tutorial for CAGE analysis☆10Sep 18, 2025Updated 5 months ago