miccec / GBMstatesLinks
Scripts from the GBM cellular states paper
☆20Updated 4 years ago
Alternatives and similar repositories for GBMstates
Users that are interested in GBMstates are comparing it to the libraries listed below
Sorting:
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- ☆21Updated last year
- ☆18Updated 3 years ago
- ☆62Updated last year
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10Updated last year
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆15Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆12Updated 4 years ago
- ☆21Updated 5 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 9 months ago
- ☆17Updated 2 years ago
- ☆15Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆16Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- Hierarchical Cell Annotation☆26Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Updated last year
- UHCA☆11Updated 11 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Updated 8 months ago
- ☆13Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆27Updated last year
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- Querying cellular states and programs by learning representations of gene sets☆14Updated last month
- ☆20Updated 2 years ago
- Code to reproduce TNBC analysis and figures☆25Updated 3 years ago
- Calculating Tumor microenvironment score☆29Updated 2 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 3 months ago