miccec / GBMstatesLinks
Scripts from the GBM cellular states paper
☆20Updated 4 years ago
Alternatives and similar repositories for GBMstates
Users that are interested in GBMstates are comparing it to the libraries listed below
Sorting:
- ☆21Updated last year
- UHCA☆11Updated 11 months ago
- ☆18Updated 3 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆28Updated last year
- ☆22Updated 6 months ago
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆15Updated last year
- ☆13Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆13Updated last year
- ☆61Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Updated 2 years ago
- A record of the analysis pipelines used to create the HTAPP data☆34Updated 9 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Updated 5 years ago
- ☆28Updated 3 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Updated last year
- ☆17Updated 4 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Updated 9 months ago
- ☆13Updated 8 years ago
- The code for processing single cell RNA-Seq dataset from ESCC cohorts☆12Updated 4 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆12Updated 2 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- ☆17Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year