ElkonLab / scAPALinks
This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.
☆19Updated 3 years ago
Alternatives and similar repositories for scAPA
Users that are interested in scAPA are comparing it to the libraries listed below
Sorting:
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 10 months ago
- ☆17Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- ☆17Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆27Updated 3 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆27Updated last month
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆20Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 10 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆38Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- ☆17Updated 11 months ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- ☆49Updated 10 months ago
- ☆34Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year