DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Neural Networks
☆14Jul 16, 2025Updated 10 months ago
Alternatives and similar repositories for DOLPHIN
Users that are interested in DOLPHIN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jan 23, 2026Updated 4 months ago
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆56Feb 18, 2026Updated 3 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 4 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆11May 12, 2025Updated last year
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18May 31, 2024Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Dec 11, 2025Updated 5 months ago
- ☆55Aug 1, 2024Updated last year
- RiboNN: predicting translation efficiencies from mRNA sequences☆58Jan 12, 2026Updated 4 months ago
- Text labelling desktop application☆16Mar 30, 2025Updated last year
- LongSom tool for long-reads☆12May 20, 2025Updated last year
- An R package for time course sequencing data analysis☆21May 8, 2023Updated 3 years ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆58May 15, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆19Jul 19, 2025Updated 10 months ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆23Apr 29, 2026Updated 3 weeks ago
- splicing and feature maps for RBPs☆25Apr 26, 2026Updated 3 weeks ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated 11 months ago
- [ICML 2025] Code for SUICA: Learning Super-high Dimensional Sparse Implicit Neural Representations for Spatial Transcriptomics.☆20Nov 22, 2025Updated 6 months ago
- ☆10May 31, 2022Updated 3 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆54May 5, 2026Updated 2 weeks ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Dec 11, 2025Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Removing Confounding Factors Associated Weights in Deep Neural Networks Improves the Prediction Accuracy for Healthcare Applications☆14Sep 18, 2020Updated 5 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆61Feb 26, 2025Updated last year
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 10 months ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆34Nov 6, 2025Updated 6 months ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆17May 4, 2026Updated 3 weeks ago
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Apr 27, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A tool for visualising kmers in 2D space.☆14Feb 23, 2025Updated last year
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- ☆11Dec 7, 2022Updated 3 years ago
- The Permutation Test - A Visual Explanation of Statistical Testing☆18Jul 13, 2024Updated last year
- Benchmarking long-read RNA-seq analysis tools☆27Feb 17, 2025Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆23Mar 30, 2024Updated 2 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago