Personalis-DASH / DASHLinks
☆12Updated last year
Alternatives and similar repositories for DASH
Users that are interested in DASH are comparing it to the libraries listed below
Sorting:
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆11Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated 2 weeks ago
- ☆11Updated 2 years ago
- ☆13Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Micro DNA identification☆24Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆61Updated 8 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- ☆36Updated 6 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 6 months ago
- ☆13Updated 7 years ago
- ☆19Updated 7 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 5 years ago
- ☆21Updated last week
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆49Updated last week
- ☆23Updated 8 months ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 3 months ago
- Long read to rMATS☆32Updated 2 years ago
- ☆38Updated 5 years ago
- ☆23Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆69Updated 6 months ago
- Fork of the Polysolver project☆31Updated 5 years ago