☆12Nov 21, 2023Updated 2 years ago
Alternatives and similar repositories for DASH
Users that are interested in DASH are comparing it to the libraries listed below
Sorting:
- Workflow for Sequenza, cellularity and ploidy☆26Aug 19, 2025Updated 6 months ago
- ☆18Aug 22, 2021Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated last year
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 3 months ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- ☆11May 26, 2023Updated 2 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Sep 12, 2017Updated 8 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Jul 27, 2023Updated 2 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Jan 3, 2026Updated last month
- ☆13Sep 18, 2017Updated 8 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18May 11, 2023Updated 2 years ago
- ☆14May 27, 2025Updated 9 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- ☆22Feb 5, 2025Updated last year
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated 9 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated last year
- ☆18Jan 30, 2023Updated 3 years ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆22Updated this week
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Apr 24, 2025Updated 10 months ago
- ☆17Jul 19, 2024Updated last year
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated 7 months ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- Comprehensive benchmark of structural variant callers☆48Feb 4, 2021Updated 5 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- Easy Copy Number !☆21Aug 27, 2025Updated 6 months ago
- Git repo for CONIPHER tree building☆25Mar 20, 2025Updated 11 months ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated last year
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆52Feb 18, 2026Updated last week
- ☆27Feb 9, 2026Updated 2 weeks ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆70Feb 21, 2026Updated last week
- Reconstruction of focal amplifications with long reads☆24Nov 2, 2025Updated 3 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 6 years ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Jul 19, 2024Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆81Nov 13, 2025Updated 3 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year