Alternatives and similar repositories for evo-devo

Users that are interested in evo-devo are comparing it to the libraries listed below

• smlmbrt / SimilarityRegression
  Predicting TF sequence-specificity similarity with weighted alignments
  ☆13Updated 5 years ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆20Updated 6 years ago
• Aufiero / circRNAprofiler
  ☆10Updated last month
• flemingtonlab / SpliceTools
  ☆17Updated 11 months ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• mdozmorov / RNA-seq
  RNA-seq analysis scripts
  ☆15Updated last month
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆19Updated 2 weeks ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 5 years ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆17Updated 4 years ago
• ajank / balancer-paper
  Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…
  ☆10Updated 5 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• RacconC / gtftools
  ☆13Updated 2 years ago
• gagneurlab / splicemap
  ☆20Updated 8 months ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 3 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆15Updated 3 years ago
• quevedor2 / aneuploidy_score
  R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…
  ☆16Updated 4 years ago
• mortazavilab / cerberus
  ☆19Updated 10 months ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆18Updated 3 months ago
• a2iEditing / deNovo-Detect
  ☆13Updated 2 years ago
• cyang235 / smooth-seq
  A pipeline for Smooth-seq data analysis.
  ☆10Updated 3 years ago
• Xinglab / rMATS-long
  ☆28Updated 6 months ago
• ChrisMaherLab / SV-Hotspot
  ☆9Updated 4 years ago
• gandallab / devBrain_xQTL
  ☆9Updated last month
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated 4 years ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago