Alternatives and similar repositories for SCAPTURE:

Users that are interested in SCAPTURE are comparing it to the libraries listed below

• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆36Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆59Updated 2 years ago
• wenweixiong / MARVEL
  ☆49Updated 9 months ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆20Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 2 weeks ago
• spcdot / CopyscAT
  Inferring CNV data from single cell ATAC seq
  ☆23Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆44Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 2 months ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆47Updated 9 months ago
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆30Updated last year
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆16Updated 2 years ago
• califano-lab / single-cell-pipeline
  ☆46Updated 5 years ago
• nghiavtr / SCmut
  ☆32Updated 5 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆34Updated 4 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆31Updated 3 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆21Updated 11 months ago
• favilaco / deconv_matching_bulk_scnRNA
  Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"
  ☆15Updated last year
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆37Updated last year
• lkmklsmn / MitoTrace
  ☆17Updated 10 months ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆29Updated 2 years ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 2 years ago
• MGI-tech-bioinformatics / DNBelab_C_Series_scRNA-analysis-software
  An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.
  ☆29Updated 2 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆73Updated 4 years ago
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆15Updated last year
• satijalab / PASTA
  ☆19Updated 8 months ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆13Updated last month
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆43Updated 10 months ago