☆20Jan 9, 2024Updated 2 years ago
Alternatives and similar repositories for SCAPTURE
Users that are interested in SCAPTURE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆27Oct 22, 2025Updated 6 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆19May 25, 2021Updated 4 years ago
- ☆21Aug 26, 2024Updated last year
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆25Dec 2, 2021Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆66Sep 12, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆15Mar 15, 2023Updated 3 years ago
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Mar 31, 2026Updated 3 weeks ago
- ☆18Jul 3, 2022Updated 3 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆53Mar 21, 2026Updated last month
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 3 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Nov 30, 2020Updated 5 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆27Jul 17, 2024Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated last month
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Accurate and fast cell marker gene identification with COSG☆64Feb 8, 2026Updated 2 months ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing☆21Sep 19, 2021Updated 4 years ago
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆25Jun 21, 2022Updated 3 years ago
- CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…☆24Apr 24, 2023Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Mar 11, 2021Updated 5 years ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆64Jun 22, 2025Updated 10 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆25Aug 1, 2022Updated 3 years ago
- ☆16Dec 11, 2018Updated 7 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆53Oct 16, 2022Updated 3 years ago
- ☆12Mar 21, 2026Updated last month
- ☆10Jul 9, 2024Updated last year
- A human universal senescence index to evaluate celluar senescence☆41Sep 11, 2025Updated 7 months ago
- ☆23Jul 9, 2025Updated 9 months ago
- Motif manipulation functions for R.☆32Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 7 years ago
- Analysis pipeline for CUT&TAG data☆23Sep 2, 2020Updated 5 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆12Apr 5, 2026Updated 3 weeks ago
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- ☆31Apr 9, 2022Updated 4 years ago
- A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysi…☆16Updated this week