☆21Aug 26, 2024Updated last year
Alternatives and similar repositories for PASTA
Users that are interested in PASTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- polyApipe☆22Feb 10, 2025Updated last year
- ☆27Oct 22, 2025Updated 9 months ago
- ☆20Jan 9, 2024Updated 2 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆25Dec 2, 2021Updated 4 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆12Mar 11, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆68Sep 12, 2023Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆33Jan 29, 2026Updated 6 months ago
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 4 years ago
- Piranha is a peak-caller for CLIP- and RIP-seq data☆21Feb 7, 2018Updated 8 years ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆25Jun 14, 2024Updated 2 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆11Jan 26, 2024Updated 2 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆13Apr 5, 2026Updated 4 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆19May 25, 2021Updated 5 years ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆36Nov 6, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆17Mar 15, 2023Updated 3 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- snakemake-based workflows☆12Jul 20, 2022Updated 4 years ago
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 5 months ago
- Snakemake pipeline for running MAJIQ☆23Dec 20, 2023Updated 2 years ago
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- Efficient stochastic gradient descent algorithms for the estimation of generalized matrix factorization models in R.☆13Dec 15, 2025Updated 7 months ago
- ☆31Sep 22, 2023Updated 2 years ago
- ☆20May 24, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆20Sep 28, 2019Updated 6 years ago
- ☆16Jun 3, 2025Updated last year
- bioinformatic pipeline for GLORI☆25Mar 30, 2026Updated 4 months ago
- ☆24May 6, 2024Updated 2 years ago
- ☆17Mar 12, 2021Updated 5 years ago
- Code and example of the D-SPIN framework☆39Aug 5, 2026Updated last week
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆54Oct 16, 2022Updated 3 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆24Jul 6, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- ☆26Jan 9, 2024Updated 2 years ago
- A tool to identify CLIP-seq peaks☆73Oct 31, 2025Updated 9 months ago
- Introduction to Reproducible Publications with Quarto☆18Updated this week
- CWL+Singularity implementation of an RNA editing workflow☆40Dec 18, 2020Updated 5 years ago
- Normalize CITEseq Data☆71Nov 9, 2025Updated 9 months ago
- New version of JACUSA -> 2.0☆32Jun 2, 2026Updated 2 months ago