satijalab / PASTA
☆17Updated 6 months ago
Alternatives and similar repositories for PASTA:
Users that are interested in PASTA are comparing it to the libraries listed below
- single-cell clustering based on alternative splicing landscapes☆19Updated last year
- ☆30Updated last month
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- Removing empty droplets in multiome datasets☆15Updated 9 months ago
- ☆33Updated 10 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- scWGCNA☆58Updated 2 years ago
- ☆45Updated 7 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆38Updated 2 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆19Updated 8 months ago
- ☆36Updated 6 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 5 months ago
- ☆26Updated 7 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Code repository for single cell RNA-seq☆34Updated 4 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆9Updated 10 months ago
- ☆32Updated 9 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 8 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 10 months ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 3 years ago
- ☆24Updated 5 months ago
- ☆24Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated 3 weeks ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Functions for single cell data analysis☆31Updated 3 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆12Updated 10 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago