satijalab / PASTALinks
☆21Updated last year
Alternatives and similar repositories for PASTA
Users that are interested in PASTA are comparing it to the libraries listed below
Sorting:
- single-cell clustering based on alternative splicing landscapes☆23Updated last year
- SNV calling from single cell sequencing☆118Updated last year
- ☆18Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆59Updated last month
- Analysis of Paired-Tag datasets☆43Updated last year
- ☆53Updated last year
- Functional Inference of Gene Regulation☆49Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆85Updated last year
- ☆31Updated 2 years ago
- ☆34Updated 2 years ago
- Code repository for single cell RNA-seq☆39Updated 5 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- ☆32Updated 11 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- ☆33Updated last year
- Create cisTarget databases☆54Updated 6 months ago
- scWGCNA☆61Updated 3 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆124Updated 7 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆112Updated 8 months ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆12Updated 2 years ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆84Updated 8 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 11 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated 3 weeks ago
- A tool for semi-automatic cell type harmonization and integration☆117Updated last month
- Repository for Cibersortx☆61Updated 4 years ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆13Updated last year