☆21Aug 26, 2024Updated last year
Alternatives and similar repositories for PASTA
Users that are interested in PASTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- polyApipe☆19Feb 10, 2025Updated last year
- ☆27Oct 22, 2025Updated 6 months ago
- ☆20Jan 9, 2024Updated 2 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆25Dec 2, 2021Updated 4 years ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆25Jun 14, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆66Sep 12, 2023Updated 2 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- Piranha is a peak-caller for CLIP- and RIP-seq data☆20Feb 7, 2018Updated 8 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆15Mar 15, 2023Updated 3 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆30Jan 29, 2026Updated 3 months ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆12Apr 5, 2026Updated 3 weeks ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆19May 25, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆12Dec 14, 2021Updated 4 years ago
- snakemake-based workflows☆12Jul 20, 2022Updated 3 years ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆34Nov 6, 2025Updated 5 months ago
- ☆30Sep 22, 2023Updated 2 years ago
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆23Dec 20, 2023Updated 2 years ago
- Efficient stochastic gradient descent algorithms for the estimation of generalized matrix factorization models in R.☆13Dec 15, 2025Updated 4 months ago
- ☆20May 24, 2025Updated 11 months ago
- ☆20Sep 28, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Jun 3, 2025Updated 11 months ago
- bioinformatic pipeline for GLORI☆22Mar 30, 2026Updated last month
- ☆23May 6, 2024Updated last year
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆90Apr 16, 2026Updated 2 weeks ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated 11 months ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆23Jul 6, 2023Updated 2 years ago
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆53Oct 16, 2022Updated 3 years ago
- ☆16Mar 12, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆25Jan 9, 2024Updated 2 years ago
- A tool to identify CLIP-seq peaks☆72Oct 31, 2025Updated 6 months ago
- An awesome list of learning resources for bioinformatics, genomics and computational biology☆25Apr 15, 2026Updated 2 weeks ago
- Introduction to Reproducible Publications with Quarto☆18Apr 28, 2026Updated last week
- Code and example of the D-SPIN framework☆25Mar 12, 2026Updated last month
- CWL+Singularity implementation of an RNA editing workflow☆40Dec 18, 2020Updated 5 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year