StatBiomed / CamoTSS
Detection and couting alternative TSS in single cells
☆14Updated 11 months ago
Alternatives and similar repositories for CamoTSS:
Users that are interested in CamoTSS are comparing it to the libraries listed below
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- single-cell clustering based on alternative splicing landscapes☆19Updated last year
- ☆46Updated 7 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated 2 months ago
- ☆18Updated 11 months ago
- RNA editing tests☆17Updated 4 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated this week
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- ☆17Updated 7 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆15Updated 2 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated last week
- ☆32Updated 9 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆19Updated 8 months ago
- Micro DNA identification☆22Updated 3 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- An analysis toolkit for single-cell methylation sequencing data☆17Updated last week
- interactive visualization of single-cell transcriptomes☆11Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆37Updated last year
- ☆20Updated 2 years ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆11Updated 2 years ago
- ☆34Updated 2 years ago
- RiboPlotR package for Ribo-plot☆14Updated last year