Detection and couting alternative TSS in single cells
☆17Apr 21, 2024Updated 2 years ago
Alternatives and similar repositories for CamoTSS
Users that are interested in CamoTSS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11Sep 21, 2026Updated last month
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 5 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Jan 21, 2018Updated 8 years ago
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 8 months ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆14Apr 5, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 6 years ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 6 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆27Oct 5, 2026Updated 3 weeks ago
- ☆15May 30, 2026Updated 5 months ago
- ☆11Jul 17, 2026Updated 3 months ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆37Nov 6, 2025Updated 11 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated 2 years ago
- Single Cell Alternative Polyadenylation using Expectation-maximization☆11Mar 15, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- polyApipe☆25Feb 10, 2025Updated last year
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆10Dec 11, 2025Updated 10 months ago
- This tool designs guides for use with the base editor technology.☆12Aug 11, 2023Updated 3 years ago
- A Foundation Language Model For Multilayer Regulation of RNA☆22Nov 30, 2025Updated 11 months ago
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 5 years ago
- ☆17Jul 19, 2024Updated 2 years ago
- ☆39Aug 6, 2026Updated 2 months ago
- ☆21Aug 26, 2024Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆33Jan 29, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆18Dec 19, 2025Updated 10 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆26Jun 14, 2024Updated 2 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆42Jan 14, 2025Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆61Jul 14, 2025Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆44Jun 17, 2024Updated 2 years ago
- Single Cell Analysis of Five'Ends☆54Mar 19, 2024Updated 2 years ago
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- A integrated pipeline for estimating Convergent accelerated evolutionary conserved non-coding elements☆21Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- slncky is a tool for lncRNA discovery from RNA-Seq data. slncky filters a high-quality set of noncoding transcripts, discovers lncRNA or…☆13Apr 13, 2021Updated 5 years ago
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- Convert raw AAIndex data into Python-friendly, ready-to-use dataframes☆11Mar 19, 2020Updated 6 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.