A versatile method for systematic identification of differential RNA splicing across platforms
☆16Oct 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for Shiba
Users that are interested in Shiba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake pipeline for running MAJIQ☆23Dec 20, 2023Updated 2 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated 2 years ago
- ☆11Jun 6, 2025Updated last year
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Aug 13, 2026Updated 2 months ago
- Identification of cell type-specific alternative splicing events using scASfind☆12Mar 23, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- ☆20Sep 28, 2019Updated 7 years ago
- ☆10Jun 27, 2024Updated 2 years ago
- ☆11Feb 12, 2024Updated 2 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆14Apr 5, 2026Updated 6 months ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆17Sep 7, 2026Updated last month
- ☆11Sep 1, 2026Updated 2 months ago
- Next generation cross-platform framework☆44Jan 7, 2023Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15May 17, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Oct 5, 2026Updated 3 weeks ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆24Apr 10, 2025Updated last year
- polyApipe☆25Feb 10, 2025Updated last year
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆11Updated this week
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- ☆21Aug 26, 2024Updated 2 years ago
- A list of alternative splicing analysis resources☆50Mar 26, 2025Updated last year
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- ☆312Aug 10, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Deconvolve individual immune cell types from cancer data☆10Apr 29, 2017Updated 9 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 6 years ago
- ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support V…☆11Dec 11, 2021Updated 4 years ago
- ☆54Aug 1, 2024Updated 2 years ago
- Introductory bioinformatics course☆27Mar 14, 2025Updated last year
- Statistical analysis for spatial omics data☆12Jul 30, 2022Updated 4 years ago
- Weakly-Supervised Cell Tracking via Backward-and-Forward Propagation, in ECCV 2020☆11Aug 4, 2020Updated 6 years ago
- CellReasoner: A reasoning-enhanced large language model for cell type annotation☆10Oct 1, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 3 years ago
- SQL-like query language for the SAM/BAM file format☆30Sep 20, 2023Updated 3 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆16Jan 16, 2024Updated 2 years ago
- Isoform-level spatial transcriptomics analysis☆19May 3, 2026Updated 6 months ago
- Infographics, pdf, how to guides, etc... all centered around Data Science topics☆18Jan 2, 2020Updated 6 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Jan 21, 2022Updated 4 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆20Apr 30, 2022Updated 4 years ago