A versatile method for systematic identification of differential RNA splicing across platforms
☆16Feb 27, 2026Updated last week
Alternatives and similar repositories for Shiba
Users that are interested in Shiba are comparing it to the libraries listed below
Sorting:
- Snakemake pipeline for running MAJIQ☆23Dec 20, 2023Updated 2 years ago
- ☆11Oct 28, 2025Updated 4 months ago
- Gencode UTR fix☆16Jan 11, 2023Updated 3 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Jan 16, 2024Updated 2 years ago
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 2 months ago
- polyApipe☆19Feb 10, 2025Updated last year
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆28Feb 22, 2026Updated last week
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated 7 months ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated 11 months ago
- A list of alternative splicing analysis resources☆48Mar 26, 2025Updated 11 months ago
- ☆54Aug 1, 2024Updated last year
- Two pass alignment for long reads☆22Mar 9, 2021Updated 4 years ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated last year
- ☆23Jun 7, 2024Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Jan 29, 2026Updated last month
- Accompanying analysis code for the FRASER manuscript☆25Aug 27, 2020Updated 5 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Oct 2, 2014Updated 11 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Mar 18, 2025Updated 11 months ago
- ☆30May 15, 2025Updated 9 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆36Nov 12, 2025Updated 3 months ago
- The Zavolab Automated RNA-seq Pipeline☆36Jan 29, 2026Updated last month
- A high throughput automated drug discovery pipeline.☆29Mar 16, 2018Updated 7 years ago
- ☆12Dec 14, 2021Updated 4 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 5 years ago
- 本仓库主要用于讨论李俊慧老师的《经济学讲义》、文章以及张五常老师的《经济解释》☆10Jun 2, 2020Updated 5 years ago
- ☆14Jul 1, 2025Updated 8 months ago
- Intuitive guide to multi-omics integration with toy examples: supervised latent components (DIABLO), unsupervised shared/partial/unique s…☆75Dec 28, 2025Updated 2 months ago
- A single cell sequencing read simulator.☆34Oct 14, 2024Updated last year
- Extract Sequence from Genome According to Annotation File☆39Apr 16, 2025Updated 10 months ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆28Mar 18, 2022Updated 3 years ago
- Biological Relationships - Biorels data preparation infrastructure for biology and drug discovery☆15May 19, 2025Updated 9 months ago
- Ressources for Boinformatics Trainings☆12Nov 20, 2023Updated 2 years ago
- Hands-on workshop on NGS data analysis @ NARO☆11Oct 24, 2023Updated 2 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- ☆39Jul 3, 2025Updated 8 months ago
- script + metadata = standalone component☆45Updated this week