junjunlab / BioSeqUtils
Extract Sequence from Genome According to Annotation File
☆29Updated last week
Related projects ⓘ
Alternatives and complementary repositories for BioSeqUtils
- Profile and Heatmap Visualization by Using ggplot2 and grid☆10Updated last year
- Arabidopsis RNA_-seq downstream analysis shiny app☆31Updated 5 years ago
- ☆18Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated last year
- ☆12Updated 3 years ago
- Detection of differential translated genes using Ribo-seq☆14Updated 3 years ago
- Network analysis for multi-omics☆13Updated 4 months ago
- Some NGS workflow created by snakemake☆12Updated 2 weeks ago
- ☆10Updated 3 weeks ago
- extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.☆10Updated 2 years ago
- An R package to visualize bigwigs.☆29Updated 2 years ago
- ☆21Updated 5 months ago
- ☆16Updated last year
- scripts for analyzing the CVDC data.☆17Updated 4 years ago
- an efficient Hi-C data processing pipeline☆15Updated 7 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 4 months ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆16Updated 5 years ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆28Updated 4 months ago
- RNA editing tests☆16Updated 4 years ago
- ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …☆18Updated 4 months ago
- ☆23Updated last year
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆29Updated 3 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆18Updated last year
- ☆17Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Creating Circular Graph with the Grammar of GGplot2☆18Updated 10 months ago
- ☆24Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆14Updated last year
- An elegant package to visualize gene structures☆69Updated last year
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆66Updated 2 weeks ago