Extract Sequence from Genome According to Annotation File
☆40Apr 16, 2025Updated 11 months ago
Alternatives and similar repositories for BioSeqUtils
Users that are interested in BioSeqUtils are comparing it to the libraries listed below
Sorting:
- Integrating Ribo-SEQ Upstream and Downstream Analysis☆11Oct 14, 2024Updated last year
- Profile and Heatmap Visualization by Using ggplot2 and grid☆12Nov 21, 2023Updated 2 years ago
- An elegant package to visualize gene structures☆83Apr 8, 2023Updated 2 years ago
- funny geom/stat functions for visualization☆11Aug 30, 2023Updated 2 years ago
- A Package for Ribosome Profiling Data Analysis☆18Jan 17, 2026Updated 2 months ago
- An R package to visualize bigwigs.☆32Jul 5, 2022Updated 3 years ago
- Visualizing SingleCell data Using GGplot2☆37Sep 28, 2024Updated last year
- A Shiny App for Interactive RNAseq Analysis and Visualization☆14Aug 6, 2024Updated last year
- Creating Circular Graph with the Grammar of GGplot2☆22Jan 5, 2024Updated 2 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Dec 7, 2022Updated 3 years ago
- gghic makes visualization of Hi-C/-like data easily in R☆25Jan 23, 2026Updated last month
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Jun 17, 2025Updated 9 months ago
- ☆22Dec 13, 2025Updated 3 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Mar 14, 2026Updated last week
- Extract gene length based on featureCount calculation gene nonredundant exon length method.☆19Feb 14, 2022Updated 4 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- An annotation package for ggplot plot☆120Nov 17, 2025Updated 4 months ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Useful functions to make your scRNA-seq plot more cool!☆379Dec 24, 2025Updated 2 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Mar 25, 2022Updated 3 years ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Mar 6, 2024Updated 2 years ago
- Implementation of Seurat's SpatialFeaturePlot to allow blended expression☆11Feb 28, 2025Updated last year
- ☆12Jun 7, 2024Updated last year
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated last month
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- Toy files and training material to introduce Linux to molecular biologists☆22Jul 21, 2023Updated 2 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- Centromics: visualing centromeres with multiple omics data☆25Mar 4, 2025Updated last year
- An implement R package to visualize GSEA results☆213Dec 8, 2025Updated 3 months ago
- extract gene TSS site form gencode/ensembl/gencode database GTF file and export bed format file.☆12Jan 24, 2022Updated 4 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 4 years ago
- Figures for the CHM13 T2T SD paper.☆10Sep 12, 2021Updated 4 years ago
- Analyzing Hi-C data in R with HiCExperiment objects☆16Mar 18, 2025Updated last year
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- ☆23Jan 7, 2026Updated 2 months ago
- One-step to Cluster and Visualize Gene Expression Matrix☆360Mar 7, 2026Updated 2 weeks ago