☆64Mar 19, 2026Updated 3 weeks ago
Alternatives and similar repositories for espresso
Users that are interested in espresso are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆35Mar 17, 2026Updated 3 weeks ago
- cDNA read preprocessing☆87Jul 25, 2024Updated last year
- ☆31Nov 28, 2024Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆17Mar 30, 2026Updated last week
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆209Apr 1, 2026Updated last week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆235Mar 27, 2026Updated 2 weeks ago
- ☆18Apr 18, 2024Updated last year
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 10 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆66Oct 11, 2024Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆19Mar 28, 2026Updated 2 weeks ago
- SUPPA: Fast quantification of splicing and differential splicing☆297Nov 6, 2025Updated 5 months ago
- ☆11Sep 17, 2020Updated 5 years ago
- ☆293Mar 4, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Apr 4, 2024Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆154Jan 23, 2026Updated 2 months ago
- ☆55Aug 1, 2024Updated last year
- Long read to rMATS☆32May 5, 2023Updated 2 years ago
- ☆18May 31, 2024Updated last year
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- Quantification of transposable element expression using RNA-seq☆89Feb 8, 2024Updated 2 years ago
- long read RNA-seq quantification☆108Mar 16, 2026Updated 3 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11Dec 15, 2025Updated 3 months ago
- The analysis pipeline for FLEP-seq☆17Aug 18, 2023Updated 2 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 2 years ago
- ☆111Nov 24, 2025Updated 4 months ago
- ENCODE long read RNA-seq pipeline☆51Jan 9, 2023Updated 3 years ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆140Jun 28, 2024Updated last year
- PSI-Sigma☆40Nov 10, 2023Updated 2 years ago
- polyApipe☆19Feb 10, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A tidy interface for coverage analysis☆32Feb 18, 2020Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Mar 25, 2025Updated last year
- Full-Length Alternative Isoform analysis of RNA☆250Mar 30, 2026Updated last week
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Nov 29, 2022Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Mar 3, 2026Updated last month
- ☆20Oct 5, 2022Updated 3 years ago
- A Python library to visualize and analyze long-read transcriptomes☆67Jan 19, 2026Updated 2 months ago