Xinglab / espressoLinks
☆64Updated 3 months ago
Alternatives and similar repositories for espresso
Users that are interested in espresso are comparing it to the libraries listed below
Sorting:
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- ☆60Updated 5 months ago
- Software for Quantifying Interspersed Repeat Expression☆63Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆62Updated 7 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last month
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- Quantification of transposable element expression using RNA-seq☆78Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆31Updated 2 months ago
- Allele-specific alignment sorting☆61Updated 3 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ENCODE long read RNA-seq pipeline☆52Updated 3 years ago
- ☆49Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 2 months ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆113Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆53Updated 3 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Publication quality NGS track plotting☆117Updated 3 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆118Updated 6 months ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 8 months ago