Xinglab / espresso
☆60Updated 7 months ago
Alternatives and similar repositories for espresso:
Users that are interested in espresso are comparing it to the libraries listed below
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- ☆54Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆56Updated 3 months ago
- Tutorial Website☆57Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- ☆41Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆62Updated 8 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆25Updated last month
- Software for Quantifying Interspersed Repeat Expression☆55Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated this week
- Estimate locus specific human LINE-1 expression.☆33Updated 2 years ago
- Analysis software for Nanorate Sequencing (NanoSeq) experiments☆16Updated 2 months ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆49Updated last month
- A list of alternative splicing analysis resources☆43Updated 4 months ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆57Updated last year
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆66Updated 5 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 5 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆36Updated last month
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆86Updated last week
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- release version☆51Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆43Updated 7 years ago
- A Python library to visualize and analyze long-read transcriptomes☆59Updated last year
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆42Updated last year
- Quantification of transposable element expression using RNA-seq☆64Updated last year