Xinglab / espressoLinks
☆62Updated last year
Alternatives and similar repositories for espresso
Users that are interested in espresso are comparing it to the libraries listed below
Sorting:
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- ☆58Updated 2 weeks ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆67Updated 2 weeks ago
- Quantification of transposable element expression using RNA-seq☆72Updated last year
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated 2 months ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Software for Quantifying Interspersed Repeat Expression☆60Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- ☆44Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆94Updated this week
- Publication quality NGS track plotting☆114Updated 3 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆68Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 4 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- HiC uniform processing pipeline☆60Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated last week