alexchwong / SpliceWizLinks
SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
☆19Updated 4 months ago
Alternatives and similar repositories for SpliceWiz
Users that are interested in SpliceWiz are comparing it to the libraries listed below
Sorting:
- ☆19Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- ☆36Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated last month
- ☆23Updated 6 months ago
- ☆26Updated 3 years ago
- ☆19Updated 11 months ago
- ☆18Updated last year
- ☆13Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last week
- Improving gene isoform quantification with miniQuant☆22Updated last week
- ☆28Updated 7 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆26Updated 2 years ago
- ☆23Updated 4 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- Structural variant merging tool☆52Updated 10 months ago
- R package for large-scale CNV analysis from RNA-seq☆15Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Enabling differential allele-specific analysis☆11Updated 6 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- ☆17Updated 11 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- alternative splicing analysis pipeline☆19Updated 4 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- Micro DNA identification☆24Updated 3 years ago
- ☆15Updated 2 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 5 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 10 months ago