Alternatives and similar repositories for SpliceWiz

Users that are interested in SpliceWiz are comparing it to the libraries listed below

• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆22Updated 2 months ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• Xinglab / rMATS-long
  ☆33Updated 10 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• a2iEditing / deNovo-Detect
  ☆13Updated 3 years ago
• RitataLU / ATACgraph
  ☆15Updated 2 years ago
• bioinform / ecTMB
  ☆18Updated 4 years ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 10 months ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated 2 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆19Updated 2 weeks ago
• a-velt / Mfuzz_RNAseq
  A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
  ☆22Updated 6 years ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated last year
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated 2 years ago
• srbehera / DRAGEN_Analysis
  ☆36Updated last year
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• deepomicslab / SpecHLA
  SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …
  ☆51Updated 2 weeks ago
• tgen / bisbee
  alternative splicing analysis pipeline
  ☆20Updated 4 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 7 months ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated 2 years ago
• mhalushka / miRge3.0
  Comprehensive analysis of small RNA sequencing data
  ☆33Updated 5 months ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• Kuanhao-Chao / OpenSpliceAI
  🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species
  ☆28Updated 3 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• MarWoes / wg-blimp
  wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
  ☆28Updated 3 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆61Updated 4 months ago
• gagneurlab / splicemap
  ☆22Updated 2 months ago
• jkimlab / msPIPE
  ☆19Updated 2 years ago