SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
☆27Oct 5, 2026Updated last month
Alternatives and similar repositories for SpliceWiz
Users that are interested in SpliceWiz are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆39Aug 6, 2026Updated 3 months ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 10 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Simulator for structural variants in various types of next-generation sequencing data☆11Mar 21, 2017Updated 9 years ago
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Apr 26, 2020Updated 6 years ago
- End-to-end analysis of Oxford Nanopore single-cell sequencing, from barcode and UMI identification to gene and transcript expression☆121Jan 23, 2026Updated 9 months ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆37Nov 6, 2025Updated last year
- cDNA read preprocessing☆96Jul 25, 2024Updated 2 years ago
- A nextflow pipeline for calling CNVs in probe-enriched sequencing workflows☆14Oct 20, 2026Updated 2 weeks ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆43Jan 14, 2025Updated last year
- ☆21May 31, 2024Updated 2 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆15Oct 5, 2026Updated last month
- Display Bioinformatics PhD programs in the US☆10Mar 11, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Dynamics analysis of Alternative PolyAdenylation from long-reads RNA-seq☆10Sep 6, 2024Updated 2 years ago
- DeepSAP repository for documentation and supplemental data☆11Jul 31, 2026Updated 3 months ago
- Single-cell Iso Prep☆16Oct 28, 2023Updated 3 years ago
- ☆11Feb 26, 2025Updated last year
- A command line tool to compute mapping statistics from a BAM file☆25Mar 7, 2022Updated 4 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆260Oct 2, 2026Updated last month
- Single cell isoform heterogeneity and differential alternative splicing analysis☆14Sep 14, 2025Updated last year
- R package to detect splicing QTLs (sQTLs)☆13Jul 3, 2023Updated 3 years ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Visualization toolkit for differential splicing events☆21Apr 19, 2026Updated 6 months ago
- The command-line interface to GGD☆43Oct 16, 2022Updated 4 years ago
- Alternative Splicing ToolKit☆10Oct 29, 2025Updated last year
- Single-cell Hi-C & RNA analysis☆11Nov 20, 2024Updated last year
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- ☆18Jul 19, 2024Updated 2 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- Svirlpool: structural variant detection from long read sequencing by local assembly☆10Oct 11, 2026Updated 3 weeks ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆137Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Identification of cell type-specific alternative splicing events using scASfind☆12Mar 23, 2024Updated 2 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆26Mar 18, 2022Updated 4 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- ☆13Jun 2, 2020Updated 6 years ago
- Ultra fast FASTQ and BAM processing, filtering, concatenation and sequencing QC/statistics.☆59Sep 26, 2026Updated last month
- ☆17Mar 3, 2026Updated 8 months ago
- Estimation of Promoter Activity from RNA-Seq data☆61Jul 14, 2025Updated last year