alexchwong / SpliceWizLinks
SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
☆21Updated 7 months ago
Alternatives and similar repositories for SpliceWiz
Users that are interested in SpliceWiz are comparing it to the libraries listed below
Sorting:
- Workflow for Sequenza, cellularity and ploidy☆22Updated 2 months ago
- ☆20Updated 3 years ago
- ☆17Updated last year
- Long read to rMATS☆32Updated 2 years ago
- ☆33Updated 10 months ago
- ☆23Updated 4 years ago
- ☆13Updated 3 years ago
- ☆15Updated 2 years ago
- ☆18Updated 4 years ago
- ☆23Updated 10 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated 2 weeks ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- isoCirc☆10Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆36Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 weeks ago
- alternative splicing analysis pipeline☆20Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- Comprehensive analysis of small RNA sequencing data☆33Updated 5 months ago
- ☆38Updated 2 years ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆28Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- ☆22Updated 2 months ago
- ☆19Updated 2 years ago