regev-lab / interpretable-splicing-modelLinks
Interpretable splicing model
☆20Updated 2 years ago
Alternatives and similar repositories for interpretable-splicing-model
Users that are interested in interpretable-splicing-model are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- ☆33Updated 2 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated last month
- Knowledge-primed neural networks☆38Updated 2 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆23Updated 2 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 5 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 7 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆40Updated last year
- Automated Modelling for Biological Evidence-based Research☆46Updated last year
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated last week
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Machine learning methods for DNA sequence analysis.☆53Updated last month
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 11 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 3 months ago
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆37Updated last year
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 8 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆66Updated 2 years ago
- ☆24Updated 4 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆95Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- ☆18Updated last year
- Biological Network Integration using Convolutions☆62Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 4 months ago
- python codes for iDNA-ABF: multi-scale deep biological language learning model for the accurate and interpretable prediction of DNA methy…☆15Updated last year
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆87Updated 2 months ago