regev-lab / interpretable-splicing-modelLinks
Interpretable splicing model
☆22Updated 2 years ago
Alternatives and similar repositories for interpretable-splicing-model
Users that are interested in interpretable-splicing-model are comparing it to the libraries listed below
Sorting:
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Updated 8 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58Updated 8 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 7 months ago
- ☆19Updated last year
- ☆33Updated 3 years ago
- Computational Optimization of DNA Activity (CODA)☆67Updated 10 months ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Updated last year
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Updated 4 months ago
- Automated Modelling for Biological Evidence-based Research☆47Updated 2 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆39Updated 10 months ago
- ☆42Updated last week
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- CpG Transformer for imputation of single-cell methylomes☆36Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆28Updated 3 years ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆43Updated last year
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆25Updated 10 months ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Updated last year
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated last year
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆45Updated 3 months ago
- pytorch dataloaders for single-cell perturbation data☆42Updated this week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 3 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆53Updated 6 months ago
- ☆74Updated 2 weeks ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆100Updated last week
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Updated last year
- Biological Network Integration using Convolutions☆64Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 3 weeks ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago