Alternatives and similar repositories for MntJULiP

Users that are interested in MntJULiP are comparing it to the libraries listed below

• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆36Updated last year
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 9 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆40Updated 3 years ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆16Updated 4 months ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆20Updated 3 years ago
• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated 2 years ago
• songlab-cal / scquint
  ☆18Updated last year
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆39Updated last month
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆25Updated 3 months ago
• Xinglab / rMATS-long
  ☆34Updated 3 weeks ago
• gagneurlab / absplice
  ☆39Updated 5 months ago
• YeoLab / gscripts
  General Use Scripts and Helper functions
  ☆16Updated 7 years ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆21Updated 8 months ago
• MatthiasLienhard / isotools
  IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.
  ☆27Updated 2 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Updated 2 years ago
• tgen / bisbee
  alternative splicing analysis pipeline
  ☆20Updated 4 years ago
• TheJacksonLaboratory / splicing-pipelines-nf
  Repository for the Anczukow-Lab splicing pipeline
  ☆16Updated 8 months ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated 2 years ago
• cortes-ciriano-lab / ReConPlot
  ☆24Updated 11 months ago
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated this week
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆19Updated 3 months ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆31Updated 2 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated 2 years ago