Alternatives and similar repositories for MntJULiP:

Users that are interested in MntJULiP are comparing it to the libraries listed below

• s-andrews / sradownloader
  A script to make downloading of SRA/GEO data easier
  ☆31Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• lcalviell / ORFquant
  An R package for Splice-aware quantification of translation using Ribo-seq data
  ☆18Updated last year
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆12Updated 7 months ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆26Updated 3 weeks ago
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆14Updated 2 years ago
• mehdiborji / nanoranger
  simplified cellranger for long-read data
  ☆18Updated 5 months ago
• gagneurlab / absplice
  ☆34Updated 6 months ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 3 years ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆16Updated 5 months ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆21Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• bedapub / splicekit
  splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq
  ☆16Updated last week
• tgen / bisbee
  alternative splicing analysis pipeline
  ☆18Updated 3 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 2 months ago
• pachterlab / qcbc
  ☆19Updated 3 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 6 months ago
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆16Updated 8 months ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆18Updated this week
• ohlerlab / RiboseQC
  Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
  ☆17Updated last year
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆34Updated 2 weeks ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated last year
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆35Updated 8 months ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆19Updated last year
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated last year
• mortazavilab / cerberus
  ☆16Updated 7 months ago