splicebox / MntJULiPLinks
Comprehensive and scalable differential splicing analyses
☆17Updated 7 months ago
Alternatives and similar repositories for MntJULiP
Users that are interested in MntJULiP are comparing it to the libraries listed below
Sorting:
- Benchmarking long-read RNA-seq analysis tools☆27Updated 8 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- ☆23Updated 4 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- ☆18Updated last year
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- simplified cellranger for long-read data☆19Updated last month
- Workflow for Sequenza, cellularity and ploidy☆22Updated 2 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆19Updated 2 years ago
- alternative splicing analysis pipeline☆20Updated 4 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆14Updated 2 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 7 months ago
- ☆33Updated 10 months ago
- isoCirc☆10Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 9 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- Accompanying analysis code for the FRASER manuscript☆26Updated 5 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- Long read to rMATS☆32Updated 2 years ago
- ☆14Updated 9 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆42Updated last year