VCCRI / SierraLinks
Discover differential transcript usage from polyA-captured single cell RNA-seq data
☆53Updated 2 years ago
Alternatives and similar repositories for Sierra
Users that are interested in Sierra are comparing it to the libraries listed below
Sorting:
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆53Updated last year
- ☆48Updated last year
- ☆32Updated 11 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Updated 2 years ago
- ☆25Updated 2 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆75Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- ☆59Updated last year
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- Clone identification from single-cell data☆61Updated 3 years ago
- ☆45Updated last month
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 4 months ago
- ☆55Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆87Updated 4 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- ☆28Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆44Updated 3 years ago
- Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)☆45Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year