wososa / PSI-SigmaLinks
PSI-Sigma
☆38Updated last year
Alternatives and similar repositories for PSI-Sigma
Users that are interested in PSI-Sigma are comparing it to the libraries listed below
Sorting:
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 4 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆61Updated 9 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆32Updated 9 months ago
- ☆38Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆58Updated 2 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Long read to rMATS☆32Updated 2 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆48Updated 2 weeks ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated 9 months ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆44Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 months ago
- Tools for analyzing DNA methylation data☆43Updated this week
- Genomic Association Tester☆32Updated 2 years ago
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- Tumor Mutational Burden☆61Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 2 months ago