Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
☆36Dec 17, 2021Updated 4 years ago
Alternatives and similar repositories for SpliZ_pipeline
Users that are interested in SpliZ_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow implementation of SpliZ☆15Aug 21, 2023Updated 3 years ago
- ☆24Jun 7, 2024Updated 2 years ago
- ☆17Feb 16, 2024Updated 2 years ago
- ☆54Aug 1, 2024Updated 2 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆19May 25, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆11Jan 26, 2024Updated 2 years ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 9 years ago
- Data and additional information from the initial MAS-ISO-seq study, "High-throughput RNA isoform sequencing using programmable cDNA conca…☆12Feb 24, 2023Updated 3 years ago
- ☆21May 31, 2024Updated 2 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Apr 10, 2020Updated 6 years ago
- ☆27Oct 22, 2025Updated 11 months ago
- splicing and feature maps for RBPs☆25Oct 4, 2026Updated last week
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆44Jun 17, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Oct 8, 2026Updated last week
- Annotated sequence data☆11Feb 2, 2025Updated last year
- DLPRB: A Deep Learning Approach for Predicting Protein-RNA Binding☆13Nov 29, 2018Updated 7 years ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated last year
- ☆312Aug 10, 2026Updated 2 months ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆23Jun 27, 2017Updated 9 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆18Sep 10, 2024Updated 2 years ago
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 5 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆68Sep 12, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Exploring Isoform-specific interactions☆13Jul 23, 2026Updated 2 months ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆18Feb 21, 2024Updated 2 years ago
- ☆17Jul 19, 2024Updated 2 years ago
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated last year
- ☆13May 13, 2024Updated 2 years ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10Jul 9, 2026Updated 3 months ago
- ☆10Dec 29, 2023Updated 2 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Interpretable splicing model☆22Jun 14, 2023Updated 3 years ago
- A list of alternative splicing analysis resources☆50Mar 26, 2025Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆30Sep 9, 2021Updated 5 years ago
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated 7 months ago
- A network-based approach for exon set enrichment☆15Jul 16, 2025Updated last year