Alternatives and similar repositories for SpliZ_pipeline

Users that are interested in SpliZ_pipeline are comparing it to the libraries listed below

• salzman-lab / SICILIAN
  ☆22Updated 11 months ago
• wenweixiong / MARVEL
  ☆49Updated 10 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• BMILAB / scAPAtrap
  ☆20Updated last year
• UPSUTER / GEMLI
  ☆32Updated 4 months ago
• liulab-dfci / lisa2
  ☆30Updated 2 years ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 7 months ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated last year
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆15Updated 3 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• PoolLab / generecovery
  ☆29Updated 2 years ago
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆17Updated 2 months ago
• songlab-cal / scquint
  ☆17Updated last year
• YiPeng-Gao / scDaPars
  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
  ☆15Updated 4 years ago
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆22Updated 6 months ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• klarman-cell-observatory / ivPerturbSeq
  ☆12Updated 4 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• gxiaolab / scAllele
  ☆34Updated last year
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 6 months ago
• satijalab / Mixscale
  ☆18Updated last month
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated this week