juliaolivieri / SpliZ_pipelineLinks
Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
☆35Updated 4 years ago
Alternatives and similar repositories for SpliZ_pipeline
Users that are interested in SpliZ_pipeline are comparing it to the libraries listed below
Sorting:
- ☆23Updated last year
- ☆53Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- scover☆24Updated 2 years ago
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- ☆18Updated last year
- Bead-based single-cell atac processing☆33Updated 4 years ago
- ☆32Updated 11 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- ☆20Updated 2 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last week
- ☆39Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- ☆25Updated 2 months ago
- ☆12Updated 6 years ago
- Vaeda method for computational doublet annotation☆18Updated last year
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 7 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 3 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 8 months ago
- Landscape Single Cell Entropy☆21Updated 5 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated 3 weeks ago
- ☆48Updated last year
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 3 months ago