juliaolivieri / SpliZ_pipelineLinks
Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
☆34Updated 3 years ago
Alternatives and similar repositories for SpliZ_pipeline
Users that are interested in SpliZ_pipeline are comparing it to the libraries listed below
Sorting:
- ☆22Updated last year
- ☆49Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- ☆20Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- ☆32Updated 7 months ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- scover☆23Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆12Updated 5 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago
- ☆17Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- binned motif enrichment analysis and visualisation☆41Updated 3 weeks ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated 2 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆37Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- cell type specific, trait-associated gene regulation☆27Updated 4 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated 3 weeks ago
- ☆23Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- ☆29Updated 2 years ago
- ☆19Updated 4 months ago