juliaolivieri / SpliZ_pipeline
Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
☆32Updated 3 years ago
Alternatives and similar repositories for SpliZ_pipeline:
Users that are interested in SpliZ_pipeline are comparing it to the libraries listed below
- ☆45Updated 7 months ago
- ☆19Updated 9 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆20Updated last year
- ☆16Updated 9 months ago
- ☆30Updated 2 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 10 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- ☆17Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated last month
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆14Updated 3 years ago
- ☆22Updated 2 years ago
- RAGE-seq scripts☆18Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- ☆29Updated last year
- A clusterability measure for scRNA-seq data.☆18Updated 3 years ago
- simplified cellranger for long-read data☆18Updated 6 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- ☆12Updated 5 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 2 months ago