a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
☆19Jul 19, 2025Updated 10 months ago
Alternatives and similar repositories for RiboMiner
Users that are interested in RiboMiner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- release version☆59Jul 29, 2022Updated 3 years ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 10 months ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 2 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆22May 6, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Feb 27, 2023Updated 3 years ago
- A list of bioinformatic tools for working with Ribo-Seq data☆21Apr 11, 2024Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Feb 17, 2026Updated 3 months ago
- Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)☆13Mar 5, 2021Updated 5 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated last year
- A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.☆75Updated this week
- optimization of ribosome P-site positioning in ribosome profiling data☆62Feb 24, 2025Updated last year
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)☆13Jul 30, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆23Jun 27, 2017Updated 8 years ago
- Readme☆10Mar 15, 2020Updated 6 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Jul 24, 2018Updated 7 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Aug 9, 2023Updated 2 years ago
- UNC-Chapel Hill Bioinformatics Utilities☆24Oct 29, 2015Updated 10 years ago
- Simple Python program to perform codon optimization or heterology calculations.☆12Apr 13, 2021Updated 5 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Jul 29, 2020Updated 5 years ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆15Sep 16, 2025Updated 8 months ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆15May 18, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated this week
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆10Apr 17, 2026Updated last month
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 10 months ago
- ☆11Jun 17, 2023Updated 2 years ago
- Working on cotton resequencing☆11Jun 2, 2020Updated 5 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 4 months ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆24Oct 3, 2016Updated 9 years ago
- Efficient target prediction incorporating accessibility of interaction sites☆53Feb 23, 2026Updated 3 months ago
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆14Feb 12, 2016Updated 10 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.☆22Sep 17, 2018Updated 7 years ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆17May 4, 2026Updated 3 weeks ago
- Analyse enhancer strength based on MPRA experiments.☆12Nov 12, 2020Updated 5 years ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Apr 27, 2025Updated last year
- Spatial omics analysis toolbox☆20May 10, 2026Updated 2 weeks ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16May 21, 2014Updated 12 years ago
- This is the Haplotypo repository☆22May 24, 2024Updated 2 years ago