a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
☆19Jul 19, 2025Updated last year
Alternatives and similar repositories for RiboMiner
Users that are interested in RiboMiner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- release version☆63Jul 29, 2022Updated 4 years ago
- single-cell clustering based on alternative splicing landscapes☆23Mar 20, 2024Updated 2 years ago
- Analyses of Ribo-seq rRNA fragments for Differential Ribosome Heterogeneity and Collision predictions☆17Updated this week
- Genome-wide assessment of differential translations with ribosome profiling data☆23May 6, 2025Updated last year
- ☆17Feb 27, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Sep 28, 2026Updated last month
- optimization of ribosome P-site positioning in ribosome profiling data☆64Feb 24, 2025Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆16Jul 2, 2023Updated 3 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated 2 years ago
- [G]enomic [P]ositioning with [Py]thon☆15Jun 19, 2026Updated 4 months ago
- Cluster decomposition-based Anomaly Detection method (scCAD) is used to effectively identify rare cell types in scRNA-seq data.☆13Sep 4, 2024Updated 2 years ago
- A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.☆80Updated this week
- ☆10Jul 19, 2024Updated 2 years ago
- uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)☆13Jul 30, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Readme☆10Mar 15, 2020Updated 6 years ago
- Code and example datasets for Does[0]Compute☆12Dec 2, 2021Updated 4 years ago
- ☆13Oct 10, 2026Updated 3 weeks ago
- Simple Python program to perform codon optimization or heterology calculations.☆12Apr 13, 2021Updated 5 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆23Jun 27, 2017Updated 9 years ago
- A Mathematica pipeline for genetic analysis in multiparental populations☆13Jan 7, 2025Updated last year
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Jul 29, 2020Updated 6 years ago
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆12Sep 30, 2026Updated last month
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆14Feb 12, 2016Updated 10 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆20Aug 9, 2023Updated 3 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆22May 29, 2026Updated 5 months ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆16Jul 10, 2026Updated 3 months ago
- Working on cotton resequencing☆11Jun 2, 2020Updated 6 years ago
- A list of bioinformatic tools for working with Ribo-Seq data☆27Apr 11, 2024Updated 2 years ago
- ☆29Oct 1, 2026Updated last month
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆16Sep 16, 2025Updated last year
- AlphaImpute2: pedigree- and population-based genotype imputation☆15Aug 24, 2026Updated 2 months ago
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆44Sep 30, 2026Updated last month
- ☆12Feb 10, 2026Updated 8 months ago
- Transcription Factor Enrichment Analysis☆37Apr 10, 2026Updated 6 months ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12May 31, 2023Updated 3 years ago
- ☆19Dec 2, 2025Updated 11 months ago
- Go to☆36Updated this week