Alternatives and similar repositories for SpatialTME

Users that are interested in SpatialTME are comparing it to the libraries listed below

• PansccSpat / SpatialMapESCC
  ☆24Updated last year
• liziyie / Onco-fetal-CAF-in-HCC
  ☆22Updated 2 years ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• compbioNJU / SpaTopic
  ☆15Updated 10 months ago
• QiangShiPKU / CoVarNet
  ☆53Updated 5 months ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 10 months ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆17Updated 3 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆34Updated 5 years ago
• aliceygao / pan-Fibroblast
  ☆54Updated last year
• JerryZhang-1222 / starTracer
  A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis
  ☆33Updated last year
• bio-Pixel / panVC
  ☆56Updated last year
• AndersonHu85 / ccRCC_multiomics
  ☆17Updated 2 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• kaifuchenlab / MEBOCOST
  ☆32Updated last month
• wu-yc / neutrophil
  ☆16Updated 2 years ago
• youqiongye / CRC_scRNAseq
  ☆48Updated 3 years ago
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆53Updated last year
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆40Updated 2 years ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated last month
• Famingzhao / NEPAL_RawCode
  NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…
  ☆15Updated last year
• lhuang1 / Th17_single_cell
  ☆13Updated 4 years ago
• lmw123 / DISCOtoolkit
  ☆34Updated 2 months ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆36Updated 2 months ago
• Zaoqu-Liu / BioEnricher
  Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer
  ☆81Updated 2 years ago
• guangchunhan / LUAD_Code
  ☆25Updated 2 years ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆32Updated 2 months ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆41Updated last year
• zdq0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 2 years ago