Alternatives and similar repositories for SpatialTME

Users that are interested in SpatialTME are comparing it to the libraries listed below

• PansccSpat / SpatialMapESCC
  ☆24Updated last year
• QiangShiPKU / CoVarNet
  ☆54Updated 5 months ago
• lmw123 / DISCOtoolkit
  ☆37Updated 3 months ago
• compbioNJU / SpaTopic
  ☆15Updated 11 months ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated 2 months ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆33Updated 3 months ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 11 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆57Updated 2 years ago
• yunshun / HumanBreast10X
  ☆28Updated 4 years ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆23Updated 2 years ago
• bio-Pixel / panVC
  ☆57Updated last year
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆26Updated last year
• aliceygao / pan-Fibroblast
  ☆57Updated last year
• AndersonHu85 / ccRCC_multiomics
  ☆17Updated 2 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆40Updated 2 years ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆17Updated 3 years ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆22Updated 2 years ago
• JerryZhang-1222 / starTracer
  A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis
  ☆33Updated last year
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆36Updated 2 months ago
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆43Updated 2 years ago
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆30Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 5 months ago
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated last year
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago
• wu-yc / neutrophil
  ☆17Updated 2 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆34Updated 5 years ago
• youqiongye / CRC_scRNAseq
  ☆48Updated 3 years ago
• Teichlab / HCA_Heart_ver2
  ☆40Updated 2 years ago